WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: EG_PF10_0232 [Plasmodium falciparum] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = EG_PF10_0232 (Len=3328) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (EG_PF10_0232, Len=3328): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MNNNSNMREAVPHFTTDNKNNESENSIMKKNLTSNFMGQVNNNKNSTCSATYLNNTNNMNISKDKNYNSNINNDNASISI 80
WD40-rpts
Query 81 TNSLLNNDQNMSMRPQMGMNKNCGGGLHNSYQKSLLSSYNMNNMSMNHLMNNSMNRYNSLNNNNYPHQDMNQTNMHMTNI 160
WD40-rpts
Query 161 KSALQNNNNNNNNDMKGNNMKQNGYMNNNNMNYQRNDMLMRNNSNSFNMAGNFYPYMNNNNNNNNSNNSSNNNNNNNNNS 240
WD40-rpts
Query 241 NNNNSNNNNSNNNNNSNNNSSYYGASSVMGLNSNTNNMMNNTSLNNNFNNNNNNMGAENNNKTMSLLNKTGGGSLDNNNT 320
WD40-rpts
Query 321 SHQPMKSLQSTINLNNRNINNMNNVSGNNNSNSINSNNINSNSVFNNNNSKGVGSFISNPSMNVKGISSVCNIASYRNST 400
WD40-rpts
Query 401 SFEKTNSIIDNNMRYMNVYNKMGYNNNVNDYHQTYDNSSALNDNLNNKDKKGKEEGNGDNEKNGTSNMMNNDNNNNNNNN 480
WD40-rpts
Query 481 NNIGDSKLRKKRGESFNTKGIIGNNAESMIFKTYNKNNDMDENNNKYGMNKGNIEMMKDSSANVSKNDNIMNNLSNNNIG 560
WD40-rpts
Query 561 GTTSNPYNLYPNFNLKYPMNMDMFNNNNNNNNMSSFNMLNRNLMNSHLNNNNNNNNNNFSSMSMFNNMGDNNNNNSSSSS 640
WD40-rpts
Query 641 MLYNNMNNFNLLNAYNNNDNNNNMNMNSIGVGLNRYNAYKNMENIKNYNEALMSGNVGGAGNNNLSNLMNMNNFNNMGYL 720
WD40-rpts
Query 721 NGRSCMNDMNMRLLNNSKFLPGNMGLSNNNYMNDHQYMNNNENLYGMMYNNMDDKNNMKYSRKGSLGAKQQQQQQQQQAL 800
WD40-rpts
Query 801 STSKGKKSASQKKKKSKNATATINGLQGGEEKLKKGVSGKIGDDFIMDNNGDLVNDGNNDDNDLYVNTYVKKSTTTKSST 880
WD40-rpts
Query 881 RKSSYYYETAEDKYNEKVRKNEKYDIFVSPNIGTIEGGRTNLRQRRKVHNYAQMEDNYFETDEEDKRVDEEKFLLRQEKQ 960
WD40-rpts
Query 961 SMGGIDRVLHHRKILDYDKINSICNNPYLYINKKNKLKGNEKNSDSNDKEKSGACDDGANIGKDNNNDVNNEDVVKDETI 1040
WD40-rpts
Query 1041 KNETIKNETIKNETINNETINNETINNETINNETINNENVKKENLADNNNNKKNEVTNVDSNKQTNNNADNDEANAVDEF 1120
WD40-rpts
Query 1121 CEEEDIEDINEVEFLIKWIDKSHIHNFFCTYDYLKNFHGIKKVDNYIKKIRQSFQKRKFMTADEIEQEKIYSEIKKQIEM 1200
WD40-rpts
Query 1201 DAIQAERIVMHKISDITNEQVFLVKWTSCAYDQCTEETKQTLIDHGFGKLIEEYFDRESKIYGMKAMASVWNRGPLSVTK 1280
WD40-rpts
Query 1281 FDPYHETPFYLNEKKLRAYQLTGLNWIVSRMKRNLSVLLADEMGLGKTVQTIAVVGHMLYKEKLIGPYLVIVPQSTVDNW 1360
WD40-rpts
Query 1361 LNEFKSWLPQANVVCYHGNAVSRELIRTHELKKVYVPNKGYRYKFDVCITTPSILNSVSDVELLKKMPWQLMVVDEAHQL 1440
WD40-rpts
Query 1441 KNRQSKRFIELKQFMAESKLLLSGTPLHNNLEELWTLLHFLNPQQYTYYETFQKKYNEIENTSLIGEAKQKQLIQLQHEL 1520
WD40-rpts
Query 1521 HEVILRRVKKDVEKSLPNKVERILRVELSPIQIEYYKNILTKNYEQLAKASGGAKNSLQNICMELKKVCNHPFLCAEPLD 1600
WD40-rpts
Query 1601 KDEYKERLVYSSGKICLLEKLLIRLKERGNRVLIFSQMVKMLNILSEYLTLRGFKHQRLDGTMTKEMRKKAMNHFNSKNS 1680
WD40-rpts (__________________________WD
Query 1681 DDFVFLLSTKAGGLGINLTSADTVIIYDSDWNPQNDLQAGARAHRIGQTKTVQIYRLVTKDSIEQTILERAKVKMVLDTL 1760
WD40-rpts 1_________________________)
Query 1761 VVQGLNKKQNDNVNYVGGETGGSSNGFTREELSKILKFGAQKLWEKNSSKYSPQKLDEDKNAIKGVDVDLDKILEEAEIN 1840
WD40-rpts
Query 1841 ENANNANKELSLNSELNALQGSSNFFNSGNSLFGNTNLVGTNGATGGSGGIADDLLSSYNNITEFKYEPPANLKSNIYND 1920
WD40-rpts
Query 1921 STKADEVDEEENDKDFWDKTIPLEERLKLKRMKEEELLVHGPRKTRAKDMRSVLYMDHGHYYNNTSSSHHNNNAHGNNNE 2000
WD40-rpts
Query 2001 DEDSDEFTIKYNDKNSKHLKKKRQRRTSTHITEKDKFRLYRSLLKFGNPSLRLDDIQEDAKLTKVDKNVILTELNIIVET 2080
WD40-rpts
Query 2081 CNEIVERVSKNEQVDDNKKEKDIVVDGVVNNDDSKTKGSNNDVADVNSKDGNKLKKGIEEENPDASLNTKDEEDNNASTT 2160
WD40-rpts
Query 2161 GSNNITTISCDDSNKQDDNKKKVEEEGEKDDTLINDTIGKEDEEGGTIGTVVSKRRRGSTLNSNSSSVMSHGMKTRDKAS 2240
WD40-rpts
Query 2241 KDDDNNNNNNKNDGNNKNDDDHHKNNDDSVEDELLLNQNDDDQLHMKNNENSNDESDGGNNKAKGIDKGKKMDAYTFFIG 2320
WD40-rpts
Query 2321 TNRANALDLCQRLKLFEALHNFIKEQNNDNEYSFKLPLKKCEEVTGEDDENGKNNEKAQTDEKTEDENVKNNEVVENNNN 2400
WD40-rpts
Query 2401 DNNNNIPVDVMIDSSKDYLKLKLPDSIFKHIRDLTSKDVKSWTRTDDENLIRGIYVYGFGSFNEICADAHLNLSHMKNIK 2480
WD40-rpts
Query 2481 CDKIKMRCVRILRMIEEVYNNKGNEQSGGRKRRRTKNKNNANVEGVTMDGSVKKEKRKYNTNSNNNNNNNDNNNNNNNRD 2560
WD40-rpts
Query 2561 VDADMDVDADVDVDVDVDVDVDVDADVEYNESSSKGHLKSGALIKVDKGNNNNNSNTTSRLSSNRKGNHYSRRSGERMKF 2640
WD40-rpts
Query 2641 THLLVDKNSASAIRKRRGYIKRGTASGVSSSNVVGGTVNGNFVDELNEEVEGEDAFLETQEDNELKERHKSNENNKHHHN 2720
WD40-rpts
Query 2721 QHYYNSKKSKKKKHANVDVSKDDKESKRKRGNNNKLNNEYDYYNYDNNEKEEDDEGGGTKFKDNEYNDDVDDDDDYDDDD 2800
WD40-rpts
Query 2801 DDDEIDPNLQRLPLRFPVIEKRKAKSTILKNAKNETIVCIESSDSSSSTEDKSIRSKGDEYDEEDEDEEEEEEDDENEDD 2880
WD40-rpts
Query 2881 DDDDVEDEDDDEESGECDKEEETGKRKRRRNSRYYKSSNKYIKDNEMLDITSVGANDEYKYEDGDNLERKKRSSKKDKKK 2960
WD40-rpts
Query 2961 KKNKLKEKKNKRKRKRRKIVDENEIMDKIKNLNINHMDYEQQQHCIKKLVKKCIKKYKKLLKLIKKVILLSVENGNQVNE 3040
WD40-rpts
Query 3041 EENQSQVVLEHEQQEDVLSSGRGRRTRTGTRTSTRTSTRRDMDYKKMEGGRRGGGGKTTSDVTTTNSYEKDENMMNKSMT 3120
WD40-rpts
Query 3121 KILPPEIFEKIEEFIIFIGKYIDKFCSICKDMECREKLIQASWEYVSKFVIIIMDGTNNKSSTTNSKTNSNSSSSRTKGK 3200
WD40-rpts
Query 3201 VNNTVKMNNSEVLRDMYKQWKDKKQVKGSDENNNNDDDDNNNNNDNVIEDEKVFIEFFYAKKASFNKNVRDRNYINNDLY 3280
WD40-rpts
Query 3281 SNSNELVYSKKGNKSEEPLSKVRKNELLEENNLNINDSNESINGEVED 3328
WD40-rpts
 1 WD40-repeats found in QUERY=EG_PF10_0232 (Len=3328): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 19 1652-1708 2.92 235.44 0.04102 25.0% 33.16Multiple sequence alignment of 1 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1652-1708 RGFKHQRLDGTMTKEMRKKAMNHFNSKNSDDFVFLLSTKAGGLGINLTSAD-TVIIYD WD40 Template TGECLRTLSGHTS------------------GVTSVSFSPDGKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |