Input parameters:

  Query = EG_PF10_0261 (Len=603)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PF10_0261, Len=603):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDNIFINSPIIKDYYNIKDFFLHIDNEIHLTELPFPCDYNTYGHFCLSNEEINKIMCTEENRFEEYNIEKENEDKITNYI 80  
WD40-rpts                                                                                      

Query       81 YQTRYSRYSKYNIKMDEYTLRRNDYVKDNNVYYNPNHHKTNSITNYKNDDINKKSDNNKYFDDDIFIFNMYKNMEERNIR 160 
WD40-rpts                                                                                      

Query      161 KNINRYNLIKDDNNMYRNILFEHSHKNIMLREYDKTKNITFHPHGTYFLTYPFYILNNNKKEKRKIPNMPYRILSAPELM 240 
WD40-rpts                            (_________________WD 1________________)        (__________

Query      241 DDFYLNLLDWSKKNIIATALCDKLYLWNNNTCTNQKLFVANKIEKEIEQKDKGDDKKTEKKDKDKKEKRKSNNDKYYNHK 320 
WD40-rpts      _______WD 2________________)(__________________WD 3_________________)(__________

Query      321 CESMEILKPSEKKKNKPQKTISSLKWNINGNFLATGLSNGVVEIWDIEKCVRIRKYKNHKSRVNTLCWNHNTLTTGGRDN 400 
WD40-rpts      ________________WD 4_________________________)   (________________WD 5__________

Query      401 KIINSDIRSKEIYYIELTKHKSEICGLEWNADGTYLASGSNDNSIYIWDKYTNKYLFHFKKHKAAVKAIAWCPYKNHILS 480 
WD40-rpts      _____)(___________________WD 6__________________)   (__________________WD 7_____

Query      481 SGGGSVDKKIFLWNIKTGKSINEIYTKSQVSNIIWSINTSELISTHSHSLNQIILWNLPQLKKVTTLRGHKSRVLYAALS 560 
WD40-rpts      _____________)   (_________________WD 8_________________)   (_________________WD

Query      561 PDGTSIATGSPDQTIRLWNIFPKCGDKSISLFFPLSNCYNTVR 603 
WD40-rpts       9________________)                        

9 WD40-repeats found in QUERY=EG_PF10_0261 (Len=603):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   183-221      4.83  314.17  0.00363        7.5%     19.07
  WD 2:  Seg  8   230-268      3.68  266.51  0.01584        5.0%     44.77
  WD 3:  Seg 12   269-309      5.80  354.05  0.00105       12.5%     26.55
  WD 4:  Seg 15   310-366      7.49  423.92  0.00012       17.5%     47.91
  WD 5:  Seg 18   370-406      6.82  396.47  0.00028       22.5%     50.65
  WD 6:  Seg 22   407-449      9.20  494.72  1.3e-05       32.5%     50.65
  WD 7:  Seg 26   453-494      7.57  427.41  0.00011       25.0%     45.88
  WD 8:  Seg 30   498-537      5.33  334.98  0.00190       20.0%     54.07
  WD 9:  Seg 34   541-579      9.99  527.38  4.8e-06       40.0%     54.66

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  183-221    -H-----------------S---HK-NIMLREYDKTKNITFHPHGTYFLT---YPFYI--LNNNKK
   WD 2  230-268    -P-----------------Y---RI-LSAPELMDDFYLNLLDWSKKNIIA---TALCD--KLYLWN
   WD 3  269-309    NN-----------------T---CTNQKLFVANKIEKEIEQKDKGDDKKT---EKKDK--DKKEKR
   WD 4  310-366    KSNNDKYYNHKCESMEILKP---SE-KKKNKPQKTISSLKWNINGNFLAT---GLSNG--VVEIWD
   WD 5  370-406    -C-----------------V---RI-RKYKNHKSRVNTLCWNHNT--LTT---GGRDN--KIINSD
   WD 6  407-449    IR-----------------SKEIYY-IELTKHKSEICGLEWNADGTYLAS---GSNDN--SIYIWD
   WD 7  453-494    -N-----------------K---YL-FHFKKHKAAVKAIAWCPYKNHILSSGGGSVDK--KIFLWN
   WD 8  498-537    -G-----------------K---SI-NEIYTK-SQVSNIIWSINTSELIS---THSHSLNQIILWN
   WD 9  541-579    -L-----------------K---KV-TTLRGHKSRVLYAALSPDGTSIAT---GSPDQ--TIRLWN

   WD40 Template    TG-----------------E---CL-RTLSGHTSGVTSVSFSPDGKRLVS---GSEDG--TIKVWD