WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: EG_PF11_0056 [Plasmodium falciparum] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = EG_PF11_0056 (Len=644) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (EG_PF11_0056, Len=644): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MEFRRYFSSEDYIFEIKNNEQLFVCENVAKNIKPLWSLKGHRNSIEGLHLLDDERFCTVSHDNLVSLWRLENKQNIVNIK 80
WD40-rpts (________________WD 1________________) (_______
Query 81 FDDAILCSSYLKKNKYLCIGRTNMNNNINIINMDKEEIIESYKSECNSIFCINYYDDNKISYGSKDGSICFLDLIKKKNI 160
WD40-rpts __________WD 2_________________) (________________WD 3________________) (___
Query 161 YRYEEIGDCINYCTSSFSDNCFYNSNINNNNDTILMNPNFHIFSTYKGNILFFDLRCMLPIYQNNNLHSNYSVNCIYCYN 240
WD40-rpts _______________WD 4_________________) (_________________WD 5_
Query 241 YFLYSGASDCLIKKYDIRYIDENKPLDIYVGHTSPIRYISFSKDFSYFTTSSDNGSIKLWSVNKKKEENENKIYSSFNNL 320
WD40-rpts _______________) (_________________WD 6________________) (_______________
Query 321 ISPSSAFSFDLDSPVNDSLKVKKMNMKNKEMPDKFVEINKQTKNKTIKQNKTISHNNNNNMRSSSIISDTNYYVNNLYDT 400
WD40-rpts __WD 7________________) (_________________WD 8________________)
Query 401 TQKKKERKNIFSKKYENILLEFQKKKRTITPNTILSISNEKKKKVQAVSKNELFNMCKMNKTQVDKEKEKKNYKGQFFLN 480
WD40-rpts (_________________WD 9________________) (_____________
Query 481 QSVNINKMDNILMNSKKNQSIKEMDILKNKKRNDQLKTNIKNKLHIPSPMQYTNTKGDKTYKGKNERSYLKRNISKDTNK 560
WD40-rpts ____WD10________________) (_________________WD11_________________)
Query 561 YLNIQSPISNKFNESDYRSFFYNNENVINNLYPSSQKVKIKYANLSMLNHKGRVTSMEWLGDLLFSASWDQTIKCWNVKK 640
WD40-rpts (_________________WD12________________)(_______________WD13______________)
Query 641 YLME 644
WD40-rpts
 13 WD40-repeats found in QUERY=EG_PF11_0056 (Len=644): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 4 32-69 7.12 408.58 0.00019 22.5% 51.69 WD 2: Seg 8 73-112 5.24 331.05 0.00215 12.5% 52.03 WD 3: Seg 12 116-153 7.63 429.90 1.0e-04 22.5% 52.63 WD 4: Seg 16 157-197 5.73 351.42 0.00114 7.5% 49.94 WD 5: Seg 22 218-256 8.00 444.98 6.3e-05 20.0% 51.20 WD 6: Seg 26 263-301 9.63 512.59 7.7e-06 35.0% 56.37 WD 7: Seg 30 305-343 7.11 408.52 0.00019 12.5% 43.65 WD 8: Seg 35 361-399 6.90 399.68 0.00026 7.5% 19.24 WD 9: Seg 39 411-449 5.44 339.48 0.00166 5.0% 39.13 WD10: Seg 43 467-505 6.68 390.78 0.00034 17.5% 26.20 WD11: Seg 48 520-559 4.59 304.17 0.00495 17.5% 17.48 WD12: Seg 51 564-602 6.34 376.76 0.00052 7.5% 23.54 WD13: Seg 54 603-637 6.29 374.63 0.00056 32.5% 46.12Multiple sequence alignment of 13 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 32-69 -IKPLWSLKGHRNSIE--GLHLLDDE-RFCTV--SHDNLVSLWR WD 2 73-112 -KQNIVNIKFDDA-IL--CSSYLKKNKYLCIGRTNMNNNINIIN WD 3 116-153 -EEIIESYKSECNSIF--CINYYDDNK-ISYG--SKDGSICFLD WD 4 157-197 -KKNIYRYEEIGDCINYCTSSFSDNCFYNSNI--NNNNDTILMN WD 5 218-256 -MLPIYQNNNLHSNYS--VNCIYCYNYFLYSG--ASDCLIKKYD WD 6 263-301 -NKPLDIYVGHTSPIR--YISFSKDFSYFTTS--SDNGSIKLWS WD 7 305-343 -KKEENENKIYSSFNN--LISPSSAFSFDLDS--PVNDSLKVKK WD 8 361-399 -QTKNKTIKQNKTISH--NNNNNMRSSSIISD--TNYYVNNLYD WD 9 411-449 FSKKYENI-LLEFQKK--KRTITPNTILSISN--EKKKKVQAVS WD10 467-505 -EKEKKNYKGQFFLNQ--SVNINKMDNILMNS--KKNQSIKEMD WD11 520-559 IKNKLHIPSPMQYTNT--KGDKTYKGKNERSY--LKRNISKDTN WD12 564-602 -IQSPISNKFNESDYR--SFFYNNENVINNLY--PSSQKVKIKY WD13 603-637 ---ANLSMLNHKGRVT--SMEWL--GDLLFSA--SWDQTIKCWN WD40 Template TGECLRTLSGHTSGVT--SVSFSPDGKRLVSG--SEDGTIKVWD |
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