Input parameters:
Query = EG_PF11_0063 (Len=463)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (EG_PF11_0063, Len=463):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MCCTFWGLRLDNTCNNMKSVDIIKCDMCFFSHDGLFLIYTIINKIFVIQVKNLEMYRIYVESYKVDDIKLSSDNIHFLTL 80
WD40-rpts (________________WD 1________________)(__________________WD 2_______
Query 81 IKNKGCVCIYSFYKNNLINKICDYFQTYDHSFFLSKHNNIGIVKYEKKCLTIYNMNNPEKCLINIENIKYQNKGYCSNYI 160
WD40-rpts __________) (_________________WD 3_________________) (_________________WD 4
Query 161 NTIFACLVENKKDVNILLLSLFNYTIIKIIKCINFFPNDILFSKSDHIIAYSNKNRSLHIYSIDGDLLHVYKYAEDLGGI 240
WD40-rpts ________________) (_________________WD 5________________)(_________________
Query 241 NIVSINKMKNTLALGLENGYVKILCLENFKEIKFFFLDNTLQMNDKLNIYKENISSKNHINDILSTNIKSKRKKNEHFSF 320
WD40-rpts __WD 6__________________) (____________________WD 7_____________
Query 321 YTNVSEGIKEGEYKLKREKGSVEVATKIGITFLSFSICGNYLSVLNEIHNNVVRIYETKNYSCIAILQQKNKVTFIQWDN 400
WD40-rpts _______) (_____________________WD 8____________________) (__________________WD
Query 401 ILYKPRLLICTCTCYLFMWLPFECAVIKISNDFVCKEAEWNNDGTLLLTKNDNSLALFYPRKK 463
WD40-rpts 9_________________)(_________________WD10_________________)
10 WD40-repeats found in QUERY=EG_PF11_0063 (Len=463):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 13-50 5.33 334.77 0.00192 20.0% 36.00
WD 2: Seg 5 51-91 6.79 395.28 0.00029 10.0% 51.79
WD 3: Seg 9 95-134 5.24 331.19 0.00214 5.0% 55.35
WD 4: Seg 13 139-177 5.24 331.08 0.00215 7.5% 50.22
WD 5: Seg 16 184-222 6.58 386.60 0.00038 5.0% 39.15
WD 6: Seg 20 223-265 6.87 398.49 0.00027 22.5% 54.34
WD 7: Seg 26 283-328 5.96 361.01 0.00085 12.5% 27.83
WD 8: Seg 29 331-377 6.21 371.25 0.00062 25.0% 49.67
WD 9: Seg 33 380-420 5.29 333.01 0.00202 12.5% 50.42
WD10: Seg 37 421-460 7.28 415.35 0.00016 12.5% 51.85
Multiple sequence alignment of 10 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 13-50 T--CN---N------MKSV-----DIIKCDMCFFSHDGL--FL-IYTIIN--KIFVIQV
WD 2 51-91 KNLEM---Y------RIYV-----ESYKVDDIKLSSDNI--HF-LTLIKN-KGCVCIYS
WD 3 95-134 -NNLI---N------KICD-----YFQTYDHSFFLSKHN--NIGIVKYEK--KCLTIYN
WD 4 139-177 -EKCL---I------NIEN-----IKYQNKGYCSNYINT--IF-ACLVEN--KKDVNIL
WD 5 184-222 -YTII---K------IIKC-----INFFPNDILFSKSDH--II-AYSNKN--RSLHIYS
WD 6 223-265 IDGDLLHVY------KYAE-----DLGGINIVSINKMKN--TL-ALGLEN--GYVKILC
WD 7 283-328 MNDKL---NIYKENISSKN-----HINDILSTNIKSKRK--KN-EHFSFY--TNVSEGI
WD 8 331-377 GEYKL---K------REKGSVEVATKIGITFLSFSICGN--YL-SVLNEIHNNVVRIYE
WD 9 380-420 -NYSC---I------AILQ-----QKNKVTFIQWDNILYKPRL-LICTCT--CYLFMWL
WD10 421-460 PFECA---V------IKIS-----NDFVCKEAEWNNDGT--LL-LTKNDN--SLALFYP
WD40 Template TGECL---R------TLSG-----HTSGVTSVSFSPDGK--RL-VSGSED--GTIKVWD