Accession: EG_PF11_0171 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = EG_PF11_0171 (Len=485)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PF11_0171, Len=485):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNEMKVSYLNYPIYGIGSNKDYVVTSGGGGGKNYGIEDMLDINIFNEKEKKLEVVWSTTEQRGVVDSIIYVEKYNIWLGS 80  
WD40-rpts                                                         (_________________WD 1_______

Query       81 VKNECILFEINEETGPNILLTFVTDFNERNARQVVVKFSSKDDLILTGGEDKTLRLWKLNFVKREKENKDDIKGDNKKGN 160 
WD40-rpts      _________)         (_________________WD 2________________)(_________________WD 3

Query      161 DNKTNEDNKKDNDKKTNEDKKKDNDNKTNEDKKKDNDNKTDDDNYIAVNNNLYLDKNKSVEHLGDFVGHDDSIKDCDISF 240 
WD40-rpts      _________________)  (_______________WD 4_______________)   (_________________WD 

Query      241 DEKIVCTCSSDHSLKIWDTNSFVNLHTEQMKSPQNKNDKLNFRCCKFLNHSNSFKDFTYTLLTTAYTPRGSSYLIIWKVY 320 
WD40-rpts      5________________)        (_______________________WD 6_______________________)  

Query      321 YNDKKEQFTFTKDKFIWINDRPCCNIAVSTNQKFIALGFSTGALKIYNSKFYLLAHYKKHELPITAMCFIKDDNYLLSAG 400 
WD40-rpts                 (________________WD 7_______________)  (_________________WD 8________

Query      401 ADYTISTLHINSFMFRYLRKFGRFIIYFLLLFFISIILLDSFNVGYDLRISSLFHNKAYTNITKKKRNYNVDPKKNKVIM 480 
WD40-rpts      ________)                                                                       

Query      481 DMDEL 485 
WD40-rpts

8 WD40-repeats found in QUERY=EG_PF11_0171 (Len=485):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    52-90       6.78  394.80  0.00030       10.0%     52.18
  WD 2:  Seg  9   100-138      8.59  469.41  2.9e-05       20.0%     50.51
  WD 3:  Seg 13   139-178      7.07  406.70  0.00021       12.5%      2.50
  WD 4:  Seg 15   181-216      4.47  299.36  0.00574        2.5%     34.34
  WD 5:  Seg 18   220-258      9.53  508.45  8.7e-06       30.0%     54.36
  WD 6:  Seg 23   267-318      3.38  254.30  0.02305        7.5%     38.07
  WD 7:  Seg 27   332-368      7.93  442.15  6.8e-05       12.5%     49.51
  WD 8:  Seg 31   371-409      8.81  478.46  2.2e-05       25.0%     57.48

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   52-90     -LEV-------------VWSTTEQRGVVDSIIYVEKYNIWLGSVKNECILFEI
   WD 2  100-138    -LTF-------------VTDFNERNARQVVVKFSSKDDLILTGGEDKTLRLWK
   WD 3  139-178    LNFV-------------KREKENKDDIKGDNKKGNDNKTNEDNKKDNDKKTNE
   WD 4  181-216    -KKD-------------NDNKTNEDKKKDNDNKTDDDNYIAVNN---NLYLDK
   WD 5  220-258    -VEH-------------LGDFVGHDDSIKDCDISFDEKIVCTCSSDHSLKIWD
   WD 6  267-318    TEQMKSPQNKNDKLNFRCCKFLNHSNSFKDFTYTLLT-TAYTPRGSSYLIIWK
   WD 7  332-368    ---K-------------DKFIWINDRPCCNIAVSTNQKFIALGFSTGALKIYN
   WD 8  371-409    -FYL-------------LAHYKKHELPITAMCFIKDDNYLLSAGADYTISTLH

   WD40 Template    TGEC-------------LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD