Accession: EG_PF11_0178 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = EG_PF11_0178 (Len=1784)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PF11_0178, Len=1784):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTLIIFVVSMRMNVKNFKLKKDIFEDSYLKLLIENEKIEQDAPSCYFLSYLYNNIYLYYCDILFHNKNKQVHSISHIERD 80  
WD40-rpts                                                                                      

Query       81 INFFNYENVETKKKKKINKSEEIIQNNIRRNNKNLIYIKGDEEKYINKKYINDVNDQNNLYNLNELYKVDKLYNIDKLHF 160 
WD40-rpts                                                                                      

Query      161 ITSHYLAYNKMQNSILQFYIPNFNMNKISKFDKHIKGLNKTYHHSIHYNLGANTISEQSHVLQVDHAPSCKKKKYIFKYH 240 
WD40-rpts                                                                                      

Query      241 NKIYSKKMKRNNSNKKMKYKKKQIKSSSLNISKLLFPFFGYTTSEESVMSFSKFLPEHKIARKKKKKKKKKRQKEQKEQK 320 
WD40-rpts                                                                                      

Query      321 KQKEQKEQKKQKEQKKQKEQQTNNIINNDDHHDKPYTYQSKDKEEIKHNSMLIFKEIINLCHENKIFTFKNKIKHKQNDT 400 
WD40-rpts                                                                                      

Query      401 KKNHRVLHPERFIHSTDKDQYIKIGEKHNVDNKESFDNKQKYIKTQRNLSTRSYMNTYYKDDINNSENCLLKRNKVQNEL 480 
WD40-rpts                                                                                      

Query      481 EKDHIYTSQGLHKKRSFSSCSDYVNKQDEYEKKKRTKKQNEFIINKNIIIKGKEDIISHSIVDMRNKIKKRNYEGGVKNE 560 
WD40-rpts                                                                                      

Query      561 LKNESKDIYDECKENQNIYKEKQNIYKENQNIYKENQNIYKENQNIYKEKQNIYKEKQNIYKEKQNDILTKKKNIHFLNF 640 
WD40-rpts                                                                                      

Query      641 MNIKKKKDDNILKMQILKGLNQTHYDPLHLEKIVNCKSGGIIYNHQTKTKEDEEKKKKKKKKKNLYKDEQNCMEMTNIQT 720 
WD40-rpts                                                                                      

Query      721 YKNELKSIVQKMNKHFVFKNMSVFMLNFCSLYINGEYEEIIHLYKEEYFYINFNIFYIYIKSLIKLKKYELCLKYISYIN 800 
WD40-rpts                                                                                      

Query      801 DDNIDGNNINGNNINGNNINGDNINLYNKIILTFLSALCFEKLNKLKLSITEYCKVVVHQIDNIIKDENKEYNKHDSDDN 880 
WD40-rpts                                                                                      

Query      881 NKNYKNKYNNICNYNYNYNYQCFLDPIKIHPFILICLDKVIGTHQLKIHEENTLIKYVQLHYDFNKLFHFYICKVHTMDN 960 
WD40-rpts                                                                                      

Query      961 IQKYDIKEYMNIHNDITFEFVKDPRSRKNNIYSIQINDKNLLYGNNKAKNQNDYNINNNIRKMNRNVEKTQNCYYNRKSE 1040
WD40-rpts                                                                                      

Query     1041 LRDGCYDPKRLMYHFPFFDEKKNKNKKKKKKGKNLYINMNNVLYYINNNENQDDYDMPKYLYSDNYYFVDDHKESDEEIN 1120
WD40-rpts                                                                                      

Query     1121 RKDIILYLQNRNEDKYTVNHNNILNNNEFHYNYFLAHYIVPQGACNHFCHKYTIKKINHFIDTAYTNKNILGTIKKLGVE 1200
WD40-rpts                                                                                      

Query     1201 LNIIYEKCLQDYETRGNNNKRNIYNNKYIHDNKYIHDNKHIYDNNKYIHDNKHIYNNNKHIHDNNKHIYNNNKHIHDNNK 1280
WD40-rpts                                                                                      

Query     1281 HIYNNNKHIYNNNKHIHNNYHHIDDDHHNNYLYKFDPVTLIDLLCIAFYCLKNYDYINCYYISKYITKERKQYENDEAIL 1360
WD40-rpts                                                                                      

Query     1361 LYITSITNLGSVFKSSQEKIKEIFLLYNERVSDIIFRKKKYYYKEEKYRYENDYIDYYMFGIIHFLNNNFNKALLYFVKC 1440
WD40-rpts                                                                                      

Query     1441 MQLKGNFYMCYVYMLYIFLSFLTKNRKKNYKKFIFFKCLKLKPHNITPYLIYSSVVLGIYQRYKNGMNDNINKNKNVDKD 1520
WD40-rpts                                                                                      

Query     1521 KNINKNIDIRTDNGIDIDVDKNIYIYTDEIVYNNPSGKSNITVCVEKIHFLRDILSKALKIENDNIFVCNEYFLYNFLRK 1600
WD40-rpts                                (_____________________________________________________

Query     1601 EYLQCEVFLKKIIFICKTKFYPNNINVISSILYNMSIYYSIYQKNIYESEKYIILLLEKNPFDIKALHVLIHIFFIKKNK 1680
WD40-rpts      ___WD 1_______________________________________________________)                 

Query     1681 NWIPLFDYSIYLEHVLLSLDNGILFYDTRKMINKQRRNTYLFYNFFNQLEKTKHGSSLYFTYYSKIKRVRKFDTFLKKYI 1760
WD40-rpts                                                                                      

Query     1761 QERKHQEYGFEVAGGGFLCSEQTK 1784
WD40-rpts

1 WD40-repeats found in QUERY=EG_PF11_0178 (Len=1784):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 30  1547-1663     3.46  257.77  0.02072       25.0%     22.31

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1547-1663   TDEIVYNNPSGKSNITVCVEKIHFLRDILSKALKIENDNIFVCNEYFLYNFLRKEYLQCEVFLKKIIFICKTKFYPNNINVISSILYNMSIYYSIYQKNIYESEKYIILLLEKNPFD

   WD40 Template    TGECLRTLSGHTSGVTS------------------------VS------------------------------FSPDGKRLVSGSEDG----------TIKV-------------WD