Input parameters:

  Query = EG_PF11_0195 (Len=391)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PF11_0195, Len=391):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MIDHLKCNCIKYNIPDEDCEPVIKVSENKDDMLVAVSSNKRNILLYKIINREIIYSDTFYIGDPNKIIALEWSKQNDLLI 80  
WD40-rpts      (_____________________WD 1____________________)  (__________________WD 2________

Query       81 VTIDMKCIIYKKKENGKWECTNVNIPTEDLPTCACWHPHTYSFAIGFTSGIIFICSKKENQKWKIKKINNHVASVMFIDW 160 
WD40-rpts      __________)      (_________________WD 3________________)  (__________________WD 

Query      161 SSSGYILSTNSLDSTSLLVCTSGLLDDNIKNRNNIKIYKNMETFITERNIHNNDIIYKIESEGYIFLHSSFSFSNEKIAI 240 
WD40-rpts      4__________________)                                (_________________WD 5______

Query      241 IATNFESTYEKQQIIILDYFKSPANTQYVSWVGQTLQRCLFLDDDKLLVYGYEIFPIIVEYLNDEWIISKVVLPEFNIKN 320 
WD40-rpts      __________)           (_________________WD 6________________)                   

Query      321 LTVDFFYDQKEIQEIEQECEHLDGNEIIGEIVAHSNYILQISMLEPYENKIYIEFITVSSDFSIVLWNFSI 391 
WD40-rpts                             (____________________WD 7___________________)   

7 WD40-repeats found in QUERY=EG_PF11_0195 (Len=391):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-47       6.43  380.10  0.00047       17.5%     45.11
  WD 2:  Seg  5    50-91       5.62  346.84  0.00132       12.5%     56.14
  WD 3:  Seg  9    98-136      7.24  413.85  0.00016       17.5%     54.02
  WD 4:  Seg 13   139-180      8.47  464.52  3.4e-05       20.0%     56.48
  WD 5:  Seg 19   213-251      7.20  412.17  0.00017        7.5%     51.96
  WD 6:  Seg 23   263-301      5.72  350.93  0.00116       25.0%     49.56
  WD 7:  Seg 30   344-388      8.35  459.41  4.0e-05       17.5%     51.41

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-47     MID--HL---KCNCIKYNIPDEDCEPVIKVSE-----NKDDMLVAVSSNKRNILLYK
   WD 2   50-91     NRE--IIYSDT-------FYIGDPNKIIALEW-----SKQND-LLIVTIDMKCIIYK
   WD 3   98-136    -WE--CT---N-------VNIPTEDLPTCACW-----HPHTYSFAIGFTSGIIFICS
   WD 4  139-180    ENQKWKI---K-------KINNHVASVMFIDW-----SSSGYILSTNSLDSTSLLVC
   WD 5  213-251    -ND--II---Y-------KIESEGYIFLHSSF-----SFSNEKIAIIATNFESTYEK
   WD 6  263-301    -PA--NT---Q-------YVSWVGQTLQRCLF-----LDDDKLLVYGYEIFPIIVEY
   WD 7  344-388    GNE--II---G-------EIVAHSNYILQISMLEPYENKIYIEFITVSSDFSIVLWN

   WD40 Template    TGE--CL---R-------TLSGHTSGVTSVSF-----SPDGKRLVSGSEDGTIKVWD