Input parameters:

  Query = EG_PF11_0222 (Len=582)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PF11_0222, Len=582):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKNRTRILKDSNIQTFNTCFDNINLNCASLKNKNLKNGPSFSFFYEYAHDRSILSLSLDESGTYMATASADHSIRIHNLK 80  
WD40-rpts      (_________________WD 1_________________)_________________WD 2________________)  

Query       81 SLSTIKELYHKKCGHYDWVSEVFFTKRNEVLSGGLDGKLCLWNTIYCCKIQKINKMMNCSEYLEQRKKVKEVKFKASNNV 160 
WD40-rpts           (________________WD 3________________)                                    (

Query      161 ITCKEMCAHHSTISDMKFDKQNDKCITSSYDKTLKLFDIRKFRELCIYKGNHTCPITKFLWLQNKIISADKNGCLCVFDV 240 
WD40-rpts      _________________WD 4________________)   (________________WD 5________________) 

Query      241 ETSQEILNAKNTHTGNIGALNYFYLYNKTEKKMINNNPNVDHEKRIDKSLPFSSISSNDIKKNYSLKNKNNNNRDKNNQH 320 
WD40-rpts         (_________________WD 6_________________)   (__________________WD 7___________

Query      321 NKREDVNYDVIYDDNCDDNIVKKNSNRNINLIRSDNLFGQHDNYLNLNNEKIPLIITGGQNDGILKVRDFRIFHKYVSYK 400 
WD40-rpts      _______)                        (________________WD 8_______________)           

Query      401 KIHTASINSIITYNLNNKTYIISCSADGYCYQFEIQSICSSNLNNYLKKICVNEPILSARYVGNHFILVGSSFGNLFLLD 480 
WD40-rpts                                   (_______________________WD 9______________________)

Query      481 FSDCSENTLTKQPKNIASINEINTNSINLSDKFNNPLNEKKSTNNDILWAFGACKKGGINCIDCIFVYDSKNKNTTEFEM 560 
WD40-rpts      (__________________WD10_________________)                                       

Query      561 YNIITAGDDGIPCFLYIPNSYI 582 
WD40-rpts                            

10 WD40-repeats found in QUERY=EG_PF11_0222 (Len=582):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-40       3.82  272.32  0.01324       10.0%     20.12
  WD 2:  Seg  4    40-78       7.93  442.07  6.9e-05       17.5%     52.01
  WD 3:  Seg  8    86-123      6.59  386.87  0.00038       27.5%     44.41
  WD 4:  Seg 15   160-198      9.07  489.35  1.6e-05       20.0%     56.11
  WD 5:  Seg 19   202-239      5.81  354.85  0.00103       17.5%     49.59
  WD 6:  Seg 23   244-283      5.53  342.92  0.00149       10.0%     47.70
  WD 7:  Seg 27   287-328      5.38  336.85  0.00180       12.5%     30.35
  WD 8:  Seg 32   353-389      4.98  320.24  0.00301       20.0%     29.61
  WD 9:  Seg 38   430-480      5.79  354.03  0.00105       10.0%     40.31
  WD10:  Seg 42   481-521      3.26  249.51  0.02670       12.5%     10.48

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-40     MKNRT-RILKDSNI-----------Q---TFNTCFDNINLNCAS-LKNKNLKNGPS
   WD 2   40-78     -SFSF-FYEYAHDR-----------S---ILSLSLDESGTYMAT-ASADHSIRIHN
   WD 3   86-123    -KELY-HKKCGHYD-----------W---VSEVFFTKRNE-VLS-GGLDGKLCLWN
   WD 4  160-198    -VITC-KEMCAHHS-----------T---ISDMKFDKQNDKCIT-SSYDKTLKLFD
   WD 5  202-239    -FREL-CIYKGNHT-----------C---PIT-KFLWLQNKIIS-ADKNGCLCVFD
   WD 6  244-283    -QEIL-NAKNTHTG-----------N---IGALNYFYLYNKTEKKMINNNPNVDHE
   WD 7  287-328    -DKSL-PFSSISSN-----------DIKKNYSLKNKNNNNRDKN-NQHNKREDVNY
   WD 8  353-389    RSD----NLFGQHD-----------N---YLNLNNEKIPLIITG-GQNDGILKVRD
   WD 9  430-480    CYQFE-IQSICSSNLNNYLKKICVNE---PILSARYVGNHFILV-GSSFGNLFLLD
   WD10  481-521    FSDCSENTLTKQPK-----------N---IASINEINTNSINLS-DKFNNPLNEKK

   WD40 Template    TGECL-RTLSGHTS-----------G---VTSVSFSPDGKRLVS-GSEDGTIKVWD