Accession: EG_PF11_0400 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = EG_PF11_0400 (Len=1920)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PF11_0400, Len=1920):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNNNNNNKYNNDIHNSINKNGSTNINNNMNMPNNIMSNIANNRGSIQSNINNIPRPMNNINNVHSNINIPSSRNISSNIN 80  
WD40-rpts                                                                                      

Query       81 MANSRNVSSNMNMTNNVGINNNMNINNNVNRTSSINVPNNMGRTSNINLSNNMSRTNNLNMNNNINSANNMNMPNNMNAS 160 
WD40-rpts                                                                                      

Query      161 NNNMNISSNVNRTSNVNRTSNMNIPNNMNIPNNMNIPNNMNMPNNMNIPNNMNIPNNMNIPNNMNIPNNMNMPNNMNMPN 240 
WD40-rpts                                                                                      

Query      241 NINMPNNINITKNRSNSILNNNVNNIPNNISSISANIKPRNMSSNIKHNLNNFNNNMVKDINVKSSIKMSNDLSNSNIHK 320 
WD40-rpts                                                                                      

Query      321 NSIINNNNNNNISNISNNSARESVMSNINYNYNNINYNNIMKNNIDINKKLNNDKNSNIDNAEKINKKIGNKMIIKNSMN 400 
WD40-rpts                                                                                      

Query      401 KNSFMNTDQNNVNMYYMNDMKNTENNIYLTNSNNNAMNKVNNIKDNSKTLQQFKENEYMENMYKREKIINDKENVYIPNK 480 
WD40-rpts                                                                                      

Query      481 APSNINQGNNTSVINNKHNINNMRNMNNTNNVNNISSMNSTNNVNKMSNMNNMNNMNNLNNVSNMNNMNNMNNINSINNM 560 
WD40-rpts                                                                                      

Query      561 NSINNMNSAINVNNSNVNNSYQVDKTVFKTINLNNINNKNRNQIYKYNNNDSNNFIMDNNINSKSNELYYNNNNNNMNNN 640 
WD40-rpts                                                                                      

Query      641 NNNNNNINNMNKNINLLYNEDGNFKSHNNNSGDNNINNNKQLFMKPFHNNIENTNDFKSNNEEINIRYNSNMIGINNANN 720 
WD40-rpts                                                                                      

Query      721 NVMLKAPANMKSTMHKVGVKKQKLKNNDTTTNNNINNNLTNIENTDNMYQLQLNKEKLNMNSTFNFMNEMDIFNDPSQSE 800 
WD40-rpts                                                                                      

Query      801 NKQSDYTSVRKYSTNNKIAKNNDQPNSKQPRGSKMSKINKIEKIDKIEKIDKMNKTNLELNNNMGNAMSVNNNMLYEEIK 880 
WD40-rpts                                                                                      

Query      881 KNNTTSFDNGINNNRIPLFNGTIPLDKNSSQHNNMKININKNSNISNSFDNSLDTDLQDDFEKLKARIEQEFEEKKNKKK 960 
WD40-rpts                                                                                      

Query      961 KKREKKEDKKENKKENKKEDKKDDKKDDKKEDKKEDKKEDKKEDKKEDKKDENKDDKKDDKKEDKNKSDIQIKDDKNEVS 1040
WD40-rpts                                                                                      

Query     1041 ILDDNIKDKETNLEKNDDILNLKKNEDQNILNNNHIHISKTENNNNDIKTNLETEINITEDCPIFKNDDKIIDNVNSNNL 1120
WD40-rpts                                                                                      

Query     1121 KSNTISDNSKNEILRNVASDETKDNNNNIDNLNNHFGSNINTNVQKDNLVTPKIKMHYSEQPYNMINRESLENLGCDKKL 1200
WD40-rpts                                                                                      

Query     1201 IALTKIFGNVMDDSDNNMTEKEPVPKLKLFDLDTYKNMSLDTMLNNLNLDKDVLNILKDKINNINRNINVTICSTPMEKQ 1280
WD40-rpts                                                                                      

Query     1281 IDKIEKEDINAPNLINCFSEFINWCDNNLIQIKLQLYNIAFCLLLEIYILLLTINYEYIENFKNQYLKKFSAYEPVTKFL 1360
WD40-rpts                                                                                      

Query     1361 LTCVSLTQIFEISLIRFKKKNSKHIVHMTKLGKKSLLQYLSVYEGIPLYNIITTKIKIIEIDDTKRNFNFFYAFVSSNFF 1440
WD40-rpts                                                                                      

Query     1441 YNVKLTFPVQWNLPSIYLTNDEIVEDENKKSLTEKEQNNYVPNENNDAYYYYKHILKTQATNRLRVTKKNIPSILYYCLN 1520
WD40-rpts                                                                                      

Query     1521 NCNDLTCAELSGYDGSLIATAHSNNIIKLWNLKKSEMNKVMNEKRDIDEINEYMDDVRKHESYLNGKKSIPLDIDEYNNK 1600
WD40-rpts                                                                (_____________________

Query     1601 GVSKLYGNTFNVSSLSFGETDKILLSGNLNGDIYLYSTISNKNYVKYVGGHTPIWSIDTAFLGYFFATAEDDGNLRIYST 1680
WD40-rpts      ______WD 1__________________________)  (_________________WD 2_________________) 

Query     1681 NKTYPFITYKYNCPVNVCKYHYNNTLVACGYYDNYVHLYDVRINSFIKRFKNNYPSNQGVTSLSFSKNGRFLSYAGGYTN 1760
WD40-rpts                                                                                      

Query     1761 NLNLIDLAMDKFVEVEQKENMGININSFDELKYADNIRKSIDGYLENDLMNIDERKNVSEIKKDDFSFYEDKILNIDFSY 1840
WD40-rpts                                             (___________________________WD 3_________

Query     1841 DNNLLVTASCNNIIDFYNCSKASQEIKSTMDKKRIKLNNTKDKNRYVKLSKSFGVHYSNLISAKFTPENALLLFGINTLI 1920
WD40-rpts      _________________)

3 WD40-repeats found in QUERY=EG_PF11_0400 (Len=1920):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 21  1579-1637     3.59  262.86  0.01772       35.0%     25.00
  WD 2:  Seg 23  1640-1679     4.50  300.49  0.00554       12.5%     33.61
  WD 3:  Seg 31  1800-1858     3.02  239.21  0.03658       20.0%     29.50

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1579-1637   KHE-------------------SYLNGKKSIPLDIDEYNNKGVSKLYGNTFNVSSLSFGETDKILLSGNLNGDIYLYS
   WD 2 1640-1679   SNK-------------------N-------------------YVKYVGGHTPIWSIDTAFLGYFFATAEDDGNLRIYS
   WD 3 1800-1858   SIDGYLENDLMNIDERKNVSEIK-------------------KDDFSFYEDKILNIDFSYDNNLLVTASCNNIIDFYN

   WD40 Template    TGE-------------------C-------------------LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD