Input parameters:

  Query = EG_PF11_0471 (Len=645)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PF11_0471, Len=645):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEEIEENANSNKVDKEILIQFVNHENVTTGPVINVPLSITKDNLDELINNLKRKNEDLGEQEESEDINYYSFMINDKLPI 80  
WD40-rpts                   (______________________WD 1______________________)   (_____________

Query       81 KNSLYEAIKDNHISSEDILSIKYFPLNIFKVKKISTCTSTLPGHTSSILCLAFSPNSSHLATGSGDNTVRLWDIYTQTPI 160 
WD40-rpts      ____WD 2________________)         (_________________WD 3________________)   (___

Query      161 ATLNDHKSWVLVVLFSPDNKFLATAGMDSNVCIYETHTGKLLNTLTGHKKEVTTLCFEPLHLLKEEDIENNVDHVNKRKI 240 
WD40-rpts      ______________WD 4________________)   (________________WD 5________________)   (

Query      241 NSNEEIDQSDNANKKIKKNDENDVIINGKDNYPSGQHKDKMMPTEGETTNSKNNSKNNSKRNISPNNTQNNTTSTNCSYF 320 
WD40-rpts      _________________WD 6________________)                     (_________________WD 

Query      321 VRSRLASAGKDGSIRINNILSNSVDQILTGHSDTITCILWSGRDTENSTLYSSSRDTTIKIWNVNEGTLIYNFKGHKHWV 400 
WD40-rpts      7________________)   (__________________WD 8__________________)   (_____________

Query      401 NCLTLNSERLLKNGIYNLDVIINKINIVNYIEKSKNIMKNFFKNQHHEKIVSGSDDGTLFLIECLQNKEYKNTRLLGHQK 480 
WD40-rpts      ___WD 9________________)(_________________WD10________________)(________________

Query      481 PVIHAQFSPNGKMIVSSSFDKSIRVWSAADGKFLAVYRGHVGPVYKVAWSIDNNFFVSCSQDSTLKLWKVSHLFQQNEIT 560 
WD40-rpts      ___WD11___________________)   (_________________WD12________________)           

Query      561 QSNIEKKQEKEQIKNQADNQKDNQKDNQANNQKDNQQKNQNNKKIKTLLVDLPGHADAVYAVDWSNDGKFVASGGKDKVL 640 
WD40-rpts       (_________________WD13_________________)    (_________________WD14_____________

Query      641 KLWSH 645 
WD40-rpts      ___) 

14 WD40-repeats found in QUERY=EG_PF11_0471 (Len=645):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    14-63       2.86  232.96  0.04423       10.0%     22.60
  WD 2:  Seg  3    67-105      6.13  367.84  0.00069        7.5%     51.49
  WD 3:  Seg  8   115-153     10.59  552.01  2.3e-06       42.5%     52.12
  WD 4:  Seg 12   157-195      9.36  501.22  1.1e-05       32.5%     58.52
  WD 5:  Seg 16   199-236      7.61  428.90  0.00010       27.5%     57.62
  WD 6:  Seg 20   240-278      7.22  412.75  0.00017        2.5%     38.19
  WD 7:  Seg 24   300-338      7.42  421.19  0.00013       15.0%     46.93
  WD 8:  Seg 28   342-383      8.28  456.80  4.3e-05       32.5%     54.36
  WD 9:  Seg 32   387-424      6.62  387.96  0.00037       15.0%     50.72
  WD10:  Seg 36   425-463      7.94  442.84  6.7e-05       17.5%     46.76
  WD11:  Seg 39   464-507      8.87  481.16  2.0e-05       40.0%     55.91
  WD12:  Seg 43   511-549      9.71  515.78  6.9e-06       37.5%     57.46
  WD13:  Seg 48   562-601      5.56  344.18  0.00143        7.5%     35.78
  WD14:  Seg 51   606-644      9.35  501.03  1.1e-05       37.5%     47.94

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   14-63     DKE----ILIQFVNHENVTTGPVIN---VPLS----ITKDNLDELINNLKRKNEDLGEQEE
   WD 2   67-105    -IN----YYSFMINDKLPIKNSLYE---AIKDN--HIS------------SEDILSIKYFP
   WD 3  115-153    -ST----CTSTLPGHTSSILCLAFS---PNSSH--LAT------------GSGDNTVRLWD
   WD 4  157-195    -QT----PIATLNDHKSWVLVVLFS---PDNKF--LAT------------AGMDSNVCIYE
   WD 5  199-236    -GK----LLNTLTGHKKEVTTLCFE---PLH-L--LKE------------EDIENNVDHVN
   WD 6  240-278    -IN----SNEEIDQSDNANKKIKKN---DENDV--IIN------------GKDNYPSGQHK
   WD 7  300-338    -KR----NISPNNTQNNTTSTNCSY---FVRSR--LAS------------AGKDGSIRINN
   WD 8  342-383    -NS----VDQILTGHSDTITCILWSGRDTENST--LYS------------SSRDTTIKIWN
   WD 9  387-424    -GT----LIYNFKGHKHWVNCLTLN---SE-RL--LKN------------GIYNLDVIINK
   WD10  425-463    -IN----IVNYIEKSKNIMKNFFKN---QHHEK--IVS------------GSDDGTLFLIE
   WD11  464-507    CLQNKEYKNTRLLGHQKPVIHAQFS---PNGKM--IVS------------SSFDKSIRVWS
   WD12  511-549    -GK----FLAVYRGHVGPVYKVAWS---IDNNF--FVS------------CSQDSTLKLWK
   WD13  562-601    --S----NIEKKQEKEQIKNQADNQ---KDNQKDNQAN------------NQKDNQQKNQN
   WD14  606-644    -KT----LLVDLPGHADAVYAVDWS---NDGKF--VAS------------GGKDKVLKLWS

   WD40 Template    TGE----CLRTLSGHTSGVTSVSFS---PDGKR--LVS------------GSEDGTIKVWD