WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: EG_PF11_0528 [Plasmodium falciparum] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = EG_PF11_0528 (Len=5922) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (EG_PF11_0528, Len=5922): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MRTYTIQHVYYFIFIENGGNMSVQKYSYGGFVNVHKFLSKSSMSIIKEIKIENNLSSVINKIKDMDKYNDNIYEKFGNSC 80
WD40-rpts
Query 81 SIYIEKLFTETYLDKDKSITLLNELLIKEVKYLLLTNNDIISEKSRNNEKNFRKDLVNNLYEEFLQQEQKEGDEEERGLL 160
WD40-rpts
Query 161 YINKIDMANKLRQILDLYSMEQPEAQEIILSLIQIDTSKIIIDHKSINKNFDLILNSKNPYSILRQFFIGNEEIINESFL 240
WD40-rpts
Query 241 RKYWFCLKNLHLFHKTYNNHVLSILGDEFKHKIIHYIQNIICNKKQISIINNYNNEESYFLNRYYYFDSFIALVISKVHN 320
WD40-rpts
Query 321 MKVSILNENGILISIHMNTLPNKYIQLVSTKYFSNTLISNRLFDDLTYLLVSEHFSVHKNITNFEISPTYLDNVEMNSIE 400
WD40-rpts
Query 401 NNYNITNESIKISPLSSQENDDIENCINNDIKTSSEEQPNIQLKYYKSLKDVLSHYKKLHSFNEESIYLLLLNIIKGNLT 480
WD40-rpts
Query 481 NLSLLFSLEVLNYLDTYCDDYIENEQEIDEKGVEYIEYINKKKKMKTNKRFKNKHKNKNLNFHFYYYDTPEVDNISNDIM 560
WD40-rpts
Query 561 ENTNLSNIYDNDVLKQLYKDIDDNNISHSSSNDIQKEMKEKNNEMKNIPQNDNKELLFNNKSNIKQPDIPKLLNNEINIS 640
WD40-rpts
Query 641 LLDTLNKSTNKISNENLYNTLYNSITHKSTQHINKTLLDPPDLSNDNITKYSTKLNSGNIFNVEHFNNLIQKVEDPTLKD 720
WD40-rpts
Query 721 EKKNEQGGKYIFLQNKSEFINNDKDDTKNDTMIKNEIDMYRNIDSWNNIAISKNVHPYQNNNTYKNTAGTKPYDNYKHHN 800
WD40-rpts
Query 801 IDDATVNFLNISGNDESHKTNKKANGKSKENDILTNSKNNKDRNVKKGNEDSNISMNDLMLNSKYFKNLCKKKKMMEKEK 880
WD40-rpts
Query 881 LKSIRELKKDLLKAKYTMFNKKSLFLNEENLKNIFESTFFDTKQMKNSIIQIISSYEIGHLSDLLNINMSNINSHFYKLK 960
WD40-rpts
Query 961 NVFLNKKKTLHYFKLNTNQYVIHKIENKLYSVFTLAWIHYTNYLRKILDIFSTKELYLLARKYYQLIHTNHDEYNLILLN 1040
WD40-rpts
Query 1041 TYGFTHVFMMYIILTYIGKNVYFITSNKSIHIKHEGLDNHNSIHIVQACNGSYIITTNKCVSDILSKNLLNNRKIHVGYD 1120
WD40-rpts
Query 1121 LNLYTTLTVDKNIPDINNKTELESENINALPQKSTDHMLSSIDYGIISHNIQEKKDTEHFNFLTIYRNENAYNINQIPSL 1200
WD40-rpts
Query 1201 ITAILCGKNYDRNNIKKCTKDDNIFSSFSKKLNLIIQKFYDNNTNFKHISLLSKKNIKQNVFINFYQNEKILLKTLVAYM 1280
WD40-rpts
Query 1281 YNMLEDIDNLCKEKEIRHQLSFVYNIIKLYILKNKIYDNTYDAYLYSIEEIIFKYKLYNQKLFEILKHLKIKHEDNQEYM 1360
WD40-rpts
Query 1361 EVLEIISLIFYGMKIRDLAKYKRENIPEMNYEILTLDLIDIINIMMFFNNFLNKINKTDEMKLIIDKEKIIEFHIVEIKK 1440
WD40-rpts
Query 1441 IIETIIDLHANYFYDIIDKQIEYNIKDILLKKMKYVFIQYKNFIEDDLKELSFKFYDNIKNEKSFLIIQDPNSYNYPIDI 1520
WD40-rpts
Query 1521 SYTKIENFEQLFFLDLIEYSFLNYTSSNLNTINNNNDKKKQNQKNKNRKYSKNNILDLYEHASTISLFYHTFNLPKEYNE 1600
WD40-rpts (___________________
Query 1601 KLFEEIFTFAQSATPSKAFVKKGHLWGKQVTEKTYDKLRLVNLQRHLRYFLESNDIDQLVNYMLNYEKVKINVRNQEEKY 1680
WD40-rpts ________________________________WD 1____________________________________________
Query 1681 KEKYNSLYMCIKEQWLYKYHVKKRKHFLSNIDIKFHLNSHDIKLCLEKNENHDNSNNKVYSEKYVHLNILTNIMLNILAY 1760
WD40-rpts _______)
Query 1761 ELHNIYKIEKKLHSIFSLMNIKNSDINNKIHININKKLNRKQKIALFYYSSNVLIHIIEILSQYFKKNILYFSEKKNETI 1840
WD40-rpts
Query 1841 YEIYSFVIQKAKPEEKIIILKEGNVFKVYNPDNKIFKKDMNHLMETSITLACYDELMKKNLYLENLVRTYTNKENVSQED 1920
WD40-rpts
Query 1921 IQQIINNFSYEKNFENIKEMIKELLYRKDINTFKKTYLTNIMKLQIEQIKNETIKTKYIHILYNEIFSLLLIEPYNDIDN 2000
WD40-rpts
Query 2001 LLNGFFLCDKGLLAWFNISLSEAKIDSNIYDNLHIFVYTLRYMIKKIKQMINIEFLEKQQLEGKSIQLFKKKDKDKDTKE 2080
WD40-rpts
Query 2081 NQNNNKNKKIQDIDFYEIFPNFLNEKIKNKNNNLSYFKWLEEFKIDKNAKLPILQDIENYKFSIMSSNDEPDYNFLSLVG 2160
WD40-rpts
Query 2161 LAHSYIENFERLKLGIYPTITYNCVATLNKLYNLYFVNELMDFINLLINHILNIYNKFFYKKREFFKDNKIQLSMRRKKE 2240
WD40-rpts
Query 2241 FANLILYNQHFDHQIINEKYEKKNNTMEDKEVIQNKEINKEKKENTGNNTDNNNLEYNKFEEYKGMSKKSESDIHTYHLD 2320
WD40-rpts
Query 2321 YLFKNLYSFFYSILDCEKNELCFFHKNDYVRNVLKKYLKKTSFNKNMIWIIPILSYHFNKPLNVLYMKDENHIYLYKYQE 2400
WD40-rpts
Query 2401 ESEIKFSIQILVEEGNQMYLILPTYFLYINVLNIITNILIQNEDIYKRKLYNEKKNETNKSIEEQSEDSNGIENENILDH 2480
WD40-rpts
Query 2481 HNRNNEKSIKNIYSSNHSCDKVLDLNLTNNILSDNYYKKMFEIILEKIHLYATKKINIYTLLISIREDISNFKYVIYYKN 2560
WD40-rpts
Query 2561 FEKFMKIMDSFFLLLNSKMNINIEFSFDEIMNTPYMVVKGSINNVINFIEKENYGIFGINIKNFYTFILHHYDSKKYYTN 2640
WD40-rpts
Query 2641 TFLKLLDFLLNAIKNEIDYQNKNIQSIQPNTEMYIKKMEYIEKLKMLESYINCEHIKVIRNMMKYVEINLHNIINFVVFK 2720
WD40-rpts
Query 2721 SKKNNLNYEYNHMNNIHNNNTIFSHKNNYNIKNNINKRDILYQCCLIYDYNELGATKLTLKYFNELEKNFVKITDFLNIL 2800
WD40-rpts
Query 2801 EKLSNEELNYDEWYSIASKIHIDYFNNSELFYFHYMNEKLFWKDGSVLFTDKIVKLLNKKKLYISTEDLEKLYNYKLTYN 2880
WD40-rpts
Query 2881 EYKHILYQSKIISKVNKNLDITYLDKENYAMSLIWSFFNTEIVINGTHLNFDDIYYKIEEWYEKNKSKNLKDTLYLLNRN 2960
WD40-rpts
Query 2961 DIYHLYNSMILFHRLIEFIDRPIFDKYKAYKITNMLFDELMNKGIYISGDSQITKEYIQSIFDYNLWKKEIQNVKISNNN 3040
WD40-rpts
Query 3041 NIRSLVPIKYINYFKSSILINLLKFISNTKLNNRIVNIITYIIYRIFKLGNTQNDILKIIKTEGILFGSIDVFRLILIKL 3120
WD40-rpts
Query 3121 NIPLDVLSIWFTLLLKNLNYITENCIIQDFIESIDFRRFFSNLFFLLHNFIEQYYFKTILKFLLGYPFVVEFIKNNEHKV 3200
WD40-rpts
Query 3201 KELFIHFKNFILLNFGTHINFFQHLYDNIEKKFISYIKYYITKFLNNLLPFSTDISTKIMLYQNDQISSLQFIEFIDEEN 3280
WD40-rpts
Query 3281 IIPLYYNIVSLIQHEPFIKAFMKKSLIIYSKMFSNTNGKMQLSHVQLIQNMYDRWIKRNSYKDQKNYAINKTTRDQNVIA 3360
WD40-rpts
Query 3361 TTNSNSSFIQKLYVPIKNRQKKNIWKGKKHSVLPPITQMDLKPYNNITYQNEDKILDEPTNVTYLNNTMKWNNKNVPFVK 3440
WD40-rpts
Query 3441 NIKADNYKYDTHNNKDNEKYISKYPILNIYNKNKTNSYISDNNSNNNNNNNNNDNDTNEKKTYAYFGTSNISLLQNNNTN 3520
WD40-rpts
Query 3521 DKIKFSYIQLYNYRTLSCLEKLFIHGFKHVENNRETEKITTNNNPVTTCSDLYKEEWTEELYNFSMNKLSMEERHIYSYT 3600
WD40-rpts
Query 3601 HDLKLIIMKGEKKNIKCEIFFKLYLNISTEYILKISRTHIVIVDFNIFRKNNELCFLYINKSHQKIYNNNNNNNNNKNDS 3680
WD40-rpts
Query 3681 NNNKNDSNNKDYPSIQKNTHFCYKVEIVPFYKTNNITKYLKDVFYTIDQKYHYDTQKKKNELGEILNDIGPNDNLYSSPF 3760
WD40-rpts
Query 3761 NIMYNMKNNNNINDQTHNIGETMNIKKIKDIKKKKNDFSYKNNKSRDIPRNNEMKKKNTLKKFFGKIKGKINNIKKNYYQ 3840
WD40-rpts
Query 3841 KYKERHEIKYKLYPNLEKLQDTLKYLTDKNIINKLLEFEYYHSNKWSSDTFGVTIQNMNGRNRNIKLILEIGDYNLTNYY 3920
WD40-rpts
Query 3921 EINVNDKKNILSLQKLDTFVKKINLKNGLMQKLKTYKKLHFLLKHLFIFKNEMKNVEYFKNERIIISDARKKESTKRNYN 4000
WD40-rpts
Query 4001 IENSNIIEKDNIEMKPEHKKEQQQGQSQNIVERFMNTPSQKEEKRENDTLEYLKFTWYSHNKKILQEIILPVKSIHPFKL 4080
WD40-rpts
Query 4081 SNHNGNVLCKSDSNIDNLLNFMKEQNENDIRQDAKKDIKNVHHDDPHFEEVNNYKHSNNTLDSFNEDYIKNHMNYSSSKI 4160
WD40-rpts
Query 4161 NNYEEKYFSDYRKYFDKIYPLNEEEKFIIRNKTHHQYILYKYRLAMLSLIIIKTNHLTNLKKMNIITNEYLKNKHKYYKH 4240
WD40-rpts
Query 4241 IQYHQNELFQKKHVYIPNRQYIIKKKLECIISLDYYKPLKKALQENNVLNNFLEDLTVEITNINMLFYKYFYTDNSNIHS 4320
WD40-rpts
Query 4321 SSFYLDKLKNIKQLCPIIYKLKNDEKYNLDDISKVDDTIKLNFNKKIEYDIKECEQKIGLYGSNIAFFGKALDNSIGKKK 4400
WD40-rpts
Query 4401 IKNIAMFSYECERSIFLEKNLSDLDPYHKNFCINILENINDNENQNESQNEGQGQGQGQGQNQSENAEQKDYYNNTYFKS 4480
WD40-rpts
Query 4481 INTTWFDMIYNTYTSNKTFDYKGQQKFSQFKCFGFADRDELKEYEKKEGAKCKITILSKTLFVLQNFIDKYYILKNEEGI 4560
WD40-rpts
Query 4561 HNGNAYNIYVLYKNIYTVIIYMLMYETRIFKPLRIQQKLNNIGNIYSMLLYTKKNYSNYLKLMLEKTSSLYLEIELLYNE 4640
WD40-rpts
Query 4641 HVFLRNIPFPNDSVYILMNEHKPFDKDTHGYKLSENPYEISNEGDDNTRVYAFFVLNLLGFYPEIQKSLLLSSHNEDMIY 4720
WD40-rpts
Query 4721 SLLDINIQQINQQIQNKEHPNDQHSFRPQHQHTNEQDKSTQGITQMVLKPLGDLYNYFFSKKEEEEKSGESKGEMKILED 4800
WD40-rpts
Query 4801 SANGKEKILEVRQNGKEKILEDSANGKEKILEVREDGKEKILEGGTEGEENMLGDSKRNEKILADELNLKYNSKEQTKDE 4880
WD40-rpts
Query 4881 QMDKKENIKNFLESNKQNILLEESKKNSNNSTNFYEINDFTWMGKDQIDDIKRLIVEHGLVKYFIKGIHLMYLQVYLKDN 4960
WD40-rpts
Query 4961 NYLEAYKEALNEELQKKDFYMHFIKTSPPFHFQNYNVHHLLLFSFYYGFSDLIRTRRPYVNLESTLNRTIENNKSIYMYR 5040
WD40-rpts
Query 5041 TNSYANFQLAANKRVALNTLHQELAKFIYKEAIQYRYLNPYYKTYKDKENITTFIYNNNNNNKDKDNVIFKFNEEKEKEL 5120
WD40-rpts
Query 5121 IDLIIINKKQPIYDTKDIKEIIIFVQIMVENFIYILNNYPSSFSLSKHSSYYNNFIKNVKQYFFSYKKENNLIYLISQRD 5200
WD40-rpts
Query 5201 IDFNISSILHISEKSTVMNILKNIIKFIFLATTRSYDVDVFVQKILNINQNSKHILKQDYSQEKQKYVNLKSTYAFIQKN 5280
WD40-rpts
Query 5281 YNVRSIKQCFKNCLKKTKKIFNKVSNATKNTNPSVTYKRFDVHPPVQDDLLDSVIFKKKDQFKRNNIPTKKSKKKNNDKV 5360
WD40-rpts
Query 5361 IKNIYIHEQPFFSKLKMRCAIMKKKLSMSMKKNKPNNNYNDYNYFNDEYNQHICDYVPHQNVNKSSLEYEKPVNIKIHKK 5440
WD40-rpts
Query 5441 KEPNENKYYNMDREIINDNNYYLSTNELDDTQNRYQGIKPVNQEKKNYIEKNIINEKINRFQKNYFDEKNNLSHSKFEQQ 5520
WD40-rpts
Query 5521 AQKEKIINNERIRNNNEDKINRNRIMNHRNLYNTGHINRSIDVNNTNIRHINNHNVTYNDDRQENHPNFEIRKNLYNMKN 5600
WD40-rpts
Query 5601 EKEKKNDNINKYSFMQFFQVNENIQNNNNNNNNNNNNNNTIDVIPKSTKTKFTTLRRFLGTRMNNLYSKLKSELFSFTLI 5680
WD40-rpts
Query 5681 NSYDFLLRNSVYFYRSNMFTKYITYYAKRNVIQSLDMLFLIVRDYELNTSLTNTYSIKHSLFNICLFKLQNISINLKNIL 5760
WD40-rpts
Query 5761 NIIDEQKMDTIVSRVISIIHTNYTGNISFIEDLINKINIILSKNFVLKKLFADFISYVTISSIQTFILHFHSKYKKKVLT 5840
WD40-rpts
Query 5841 FIISLLNNISGTISSILSEPFFQSYICTNFIKLGESFISEFNAENTVYGFFMDVGEINFIDIIIAYAYHFFPKAVNDFTQ 5920
WD40-rpts
Query 5921 MS 5922
WD40-rpts
 1 WD40-repeats found in QUERY=EG_PF11_0528 (Len=5922): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 37 1581-1688 2.95 236.55 0.03966 12.5% 8.12Multiple sequence alignment of 1 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1581-1688 HASTI-SLFYHTFNLPKEYNEKLFEEIFTFAQSATPSKAFVKKGHLWGKQVTEKTYDKLRLVNLQRHLRYFLESNDIDQLVNYMLNYEKVKINVRNQEEKYKEKYNSLY WD40 Template TGECLRTLSGHTSGVT------------------SV---------SFSPDGK-----RLV-------------SGS-------------EDGTIKV---------WD-- |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |