Input parameters:
Query = EG_PF13_0090 (Len=224)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (EG_PF13_0090, Len=224):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MNVLDVLKRWFILVFFMLQRFFEFKSKITKKSFIIFGLPSSGKTSIIYFFKLGYLITTVSTLFINEENFKINLKIEKDDT 80
WD40-rpts (_________________WD 1_______
Query 81 KEQNYDITFYEVGKNCSYNLIKEYSDISNDVIYIVDSVQKGNLSEARDDFIRILYEFRFIYRKCKFLIFMNKQDSNGCLS 160
WD40-rpts __________)
Query 161 SQEIINFFALPKDLLIRCNFISCSTLSGQGLKEGLEWLLYYNLPFYNNELNCIDRRTATKHLEL 224
WD40-rpts
1 WD40-repeats found in QUERY=EG_PF13_0090 (Len=224):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 52-91 3.24 248.54 0.02750 10.0% 21.55
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 52-91 LGYLITTVSTLFINEENFKINLKIEKDDTKEQNYDITFYE
WD40 Template TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD