WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: EG_PF13_0148 [Plasmodium falciparum] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = EG_PF13_0148 (Len=4780) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (EG_PF13_0148, Len=4780): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MNNINYDEELRTTHFYQNIPKSQRNEPAIFLNKEKNNEHLKSNNGFDETYTFSIHNYDNVIKMNEKKELNKVLLNYELGT 80
WD40-rpts
Query 81 QRMECFVGIDNENVLYIKEEYINHINSKNILVIINLFVCNLFYHLKNIGKNIHNLYLSFDKIVSPFHFSFNNNFCEKCIS 160
WD40-rpts
Query 161 DDNQNFTCTEHKNYDFSELSEKNSEQARRKKKKDYKEQISSHNYNKTNSEHTFMHTCKKKEKNEYLPNVLILWCKRVKYA 240
WD40-rpts
Query 241 INIYNNNNNIKIKKKKKILEQNGQTDNNSNNLFCDEKSRYSINECINTLTDAIFNKKNLDIFNNIHFLFPKEKSSFTNKI 320
WD40-rpts
Query 321 KHIESKRKIEKIPKEKSPVDKNTSTHINGYNNKDFLLFVDKDTLNYNLDKDDNVIEEITDLYIINYIKCKIEDYFKNVEV 400
WD40-rpts
Query 401 KKFWNIINVQYLTNFDYKYPYNKRGNEKTFYNSNKNFYESIYDYIQIIRKTTVKKDIKINEISKNCDENNINKKEEKHVT 480
WD40-rpts
Query 481 IPTTPLTLEKGRILDKEFILKDMFNNPIKNYHINEVQIYLSNYDNIFLKTIMRFYLLLNFSIELLTILYEDIDLYSIHIF 560
WD40-rpts
Query 561 YLYEKLNEYIYNEHQLCSKKGNFNIHQIYQSEDKSGDFFEHNGNNLSHFFKNNIYEMTRMKNNNDDTFHFINSNLDDDLN 640
WD40-rpts
Query 641 YRNKNNNKTNNVNMSNNNNNNDIINNVYNFLFHKNTNHNIFLFKEKKLDWFVFFLLKILMRKLWFDKHDDHDNYYSENNN 720
WD40-rpts
Query 721 HHHHHHNEYNYKMSTRGKEYQKLLNSLNAEKYKEIQKEIKALIKYTLEKRKIHFEPIINYLLNIYNKYNKKRKALNNNKI 800
WD40-rpts
Query 801 VNSKYASILKKNFLLYSLDFYTLKYFSRRDLYVNMNGFYKPRRKKYELKIPRYNNKMKEKMNRYKKYVRTFHSLIIKIQE 880
WD40-rpts
Query 881 VTNESRKTYNDNNLNSSSRDIFFKINKFILLRKSRMIYLRQLKKRVYSYYSLIPIYGNIQQTEKRRNKKILEDNRKRKKT 960
WD40-rpts
Query 961 KKNKKKNLTKKKKKIIKKKNKKKIKNNNNNNNCSSNNSYKMKKDFFFREGVHKNFFIKILNIIKIKEKVSEIVKNKNTIY 1040
WD40-rpts
Query 1041 KKLVKKINERNYICIEKMNKKKIKTYEYYYNIFINLLKTVKHQDQIIMNILFSMLKNINDHLNLFYKNICLCIPCKTSEQ 1120
WD40-rpts
Query 1121 INVQNVMKHKIEILKGDTSLFHHSNNGNIRHINENEQEENYSHLKKGDVGIMDISNMDMNDICVYNNNEFNSNTIDNHIY 1200
WD40-rpts
Query 1201 SNDVQGNSQHDNNLPGSNSVEYNPYNDKIHVDNKYRDNKYRDNKYRDNKHKDNKHDSNKYDSNPPSSQALSTDPPSSNPP 1280
WD40-rpts
Query 1281 GSNAYSIDPQNNNPYSNNLYSSNLYSSNLYSSNLYSSNFYSSNLYSSNLHSSNLHSSNLDSSNLHSSNAPKSNILHSDKF 1360
WD40-rpts
Query 1361 NYTLNIFNDEHIPNNSVCTKDTSNICCNNLSSNTSCSNNDFNTNVSSIMDEKSMRLDNSNSILFDMNNKNETCNKIKKSS 1440
WD40-rpts
Query 1441 EYNSIFEKLNKNEYNKKDKCINCDSLLNEDIIRKRKMMLDNFFNIDKYYKKKNERTNYLIYDINILKDYLYIYLKKYFDD 1520
WD40-rpts
Query 1521 IILLFEYFFSMSSNFFYNDFVNKTYKDTRIIESRECSNTYINICRTEEILENIFSLSSYDNFHIYNNNDCDNNSDNNNDN 1600
WD40-rpts
Query 1601 VLFRTRDYNNYVFIKRMKYFINNDIIQFINKGMNLINNYVNLKIYNVEKSFRILFRLLKVNNCKDPVFLFNILWSLILKY 1680
WD40-rpts (_________________________________________________
Query 1681 SKYCRKKLIKKRTINKLSNNVNKNEIEKDFIFEKKRKMFLEKFGLNYLTTSEGIILYLKYIARVCSDRNKDNDMDKDNKD 1760
WD40-rpts _____WD 1______________________________________________________)
Query 1761 NDKDNDKDNDKYNDNDKECSKYGMFNIHKNNSYLYKNRFYNLLSRKNEKTNDTYDTHVLMRRKNKKGEEVDEYKEEDNNE 1840
WD40-rpts
Query 1841 NNNNDDNNNNNNNNNNNNNNNIDHYNSDGLLKDMLNKLMQKLKGKCILQDKNKIKRVRKGEKEGNDNLILEQLSNVYEII 1920
WD40-rpts
Query 1921 HSNNLKKYDNIKLFLNIDKKKKTNRKRKFICEEENEEEDENLYIKNIDNESINIRKIKKIVIQFIDDNKYVFPYIFNTFD 2000
WD40-rpts
Query 2001 SNVVSKDMFKYEYMNLNTNFMFFHYLSQNEYSFRNSILNYVYGYPLFCIKKKNSNNENITTYNKYDDNKDDHNKDDHNKD 2080
WD40-rpts
Query 2081 DHNKDDDNKDDDNNYDANKDDDNKDDDNNYDDNNYDDNNYDDNNYDDNNYDDHIYDDHIYDDHIYDDHIYDSIKRGKYCD 2160
WD40-rpts
Query 2161 SEKNKHERNNDYNKKEASDFMNKHNFSYNPLDSFLLNNSEGVKSKMSDFSNAKVNMGNKKSKKGKDIVHNNAAMYRNKIS 2240
WD40-rpts
Query 2241 NNMRINRDHTINSSYDDYINNNKNYNNKYDCYKYNSGFSNYRDDASKEMWHNINPNDKEWKRKIKKEHNKKKRKFLIKIL 2320
WD40-rpts
Query 2321 KNTNIYNKIPLKYIHLCVIADIFKYLNLDHIVKNIMQKLYEEKLKDIQEKYDDNNKHYIGNILLCFLLYFHSFLDLLCGL 2400
WD40-rpts
Query 2401 RDGHFINMSQDDHIFNIFNNFSDLIFNNKKNYSVFSKKKKNKKKDEYKSGERKCVEQKIYMDESNISERMNRKKNKCYVY 2480
WD40-rpts
Query 2481 LKNRYSKRGNYLWLLEKKEKNDLSSYVDNIWVRFIRRRNEEKIEKDDRVNISYNLVIFLNNYLDYNFSFLNNCRLDIDES 2560
WD40-rpts
Query 2561 KCKNYLYLFSNEYNKKLFTHDEECCIEEENTCLYKYLNISIHNVHGNESYERSVLYILQLNDCLFKKGILKDTEDNIFFN 2640
WD40-rpts
Query 2641 YELVEKRDIYDMQIGRCGNNINIHDIYKKDNYFFKIKECNCCDDVICDKAELIKLLFDIMIRYLNDMLDKKKRCLLDAVI 2720
WD40-rpts
Query 2721 NFKNCKNGLEDIKFTYMLIYLLNYKKKQDKKCALIIYKNLYYLLIEKLYYEQNDNINSEQMINYIFNLIKIARIIKIKNK 2800
WD40-rpts
Query 2801 HMKKLFQMLQNYIEKFNDFHFYLFNKIFLFIYEDTKTENKIFLKTYLNKYFNDRKIISHIFNHVWNYSKGSKFLLSQKQN 2880
WD40-rpts
Query 2881 QNEGTENKKDFNKIDDGISPFVYSEDVCENMHMTKSNNINNINNINNNNNNSEYSQSICYFEKEKRKERKNLINHNNISH 2960
WD40-rpts
Query 2961 MELIKNEEEKLQHINLMKYSNDMNEEIIKKISLKYKNLYSSDSNSNCSSHGRVFFKTTYVKHKNYRMYEKEKRQIFIKKL 3040
WD40-rpts
Query 3041 KERSMLYYKKHKKINSEKKKKKHIVEDYSSDEFSYFVNESFIHFETNLKKKNYNQKIMQLNIIGSYKDYNNIDILNNVNV 3120
WD40-rpts
Query 3121 NINSSSSSFGSSSLSSSSFSSSSSSKSYKSSRNISDVNNDLDKKRGDKKVTNNYERNDDRCNMDVNRKKKRKNNICFCIN 3200
WD40-rpts
Query 3201 NLNGNNSENFLSLLSNADIRNVQKNDEKMLYVQNEEYLYRHNNKYYNNDIYKNRMGNKKDEYKIYSRLLKMPHDNSCCLI 3280
WD40-rpts
Query 3281 KYKAHYEFDDNRKNKVKKEREKERKQRETQIMCLPLYISIVGGLDIFLYNYYNYICNMYINPYFYINTYYFEKYILKKYY 3360
WD40-rpts
Query 3361 KRENNLKYDNNNNNNNNNNNTYGNSNYIRNYPHKEHTTKNYDNLLIYDYFYYNYIFNNKFTTYDSFKCVRNKRIRSECYI 3440
WD40-rpts
Query 3441 KFFKYGNEGDKQILHKKSNNNEKGEIGQIEEGAYNGIKYINNISDTNVKGIVEDKKNIRNKDKDDNKKDLDTSVSSFVLS 3520
WD40-rpts
Query 3521 FSYEEKDDKYEDKYEDKYEDKYEDKYEDKYEDKYEDKYEDKYEDKYKDKYKDKYEDKYEDKYNDKYNDKERKKRNDSRNL 3600
WD40-rpts
Query 3601 NIYTKYYNNSKAQDKIKRKNYKSICSSDQNNNEKKNSPYYFFYMDDDLSTDDEDYRLKKKEIDEIFILKRDLFVIDYLQN 3680
WD40-rpts
Query 3681 YFNFSVIRKMKNMIEDMFYNYNLNVIYVNRNVQISELDHDIGQTCEKKNGMYINVYNNNNNNENNNENNNSKMYTIKNKN 3760
WD40-rpts
Query 3761 EEMINVSKSNELSNKQEILKKPYTNLEEKDKEKMKKNETYFIEIIKNKKKHNINNNEEININNSHNIFHNSSIKEEIINK 3840
WD40-rpts
Query 3841 KKIQLSMTVINLEYWKPEKLKEEDGNIIKKMIPNFIETYFDTINNIYQIEHTDKYLIFLYELCYIDLCINNYIFTMKLSD 3920
WD40-rpts
Query 3921 GLFFLFMSNLENEIIDLYKKNLFSNNIKNMNHIYNYEYTFISSNYKHKEKYRDQTMHIIMNENIIFYDFHLIKNSNDLDK 4000
WD40-rpts
Query 4001 GTKKIGSKKGNVVSSKKETIKMKRCNINDTIRDGNNNICDDNKMCDGNNNKMCDGNNNKMCDGNNNKMCDGNNNICDDNK 4080
WD40-rpts
Query 4081 MCDDNKMCDDNDNNNNNNNNNNKHSILWWKQKRTSNNENDYKNGNPPVMNKKKKKRKEEGGGTNMIKIEQYFEYIPYGTK 4160
WD40-rpts
Query 4161 NNEEKKKKSYEKDKEVKDILEEKHNLMTEENSYTKLNKNHSLKKKIIELNKEISINVSSNNNICNNLNNDNIDDVTKISN 4240
WD40-rpts
Query 4241 PLNKQISKENFYYKLNFLKEYEEKEKKKIINEKNINDVYIKLFFTEDFLIQKTNIPEKFIKDMLKKLSRKKFLHKNSFKV 4320
WD40-rpts
Query 4321 MNKKNNKTTQFYVYSLGNFDDPNITNFHDDKIIKGPQEELLLSPLDIQRLQENKMKENKHYDNIRNEYKHQKDRQMFNVH 4400
WD40-rpts
Query 4401 PYDSFDNDIGKGNTNIICKNKKIKTNNLLQNKVHKNSLNNTTSVYNERQIYSIVNENIKCNLYNNNNNNNNNNSNIVEQI 4480
WD40-rpts
Query 4481 SDVDKNIIIEKAMIKQKDDQLLHNNQMMLINNNVCYGNDDMSFHNNNPFTYDNLIYNSVKKSSHFEGDLKIRNLNNYIHK 4560
WD40-rpts
Query 4561 DNSNTIINTNTSILSNNNNNNNDCNIISSNKTAVKDIICINKNNIVDDNEQINKIETKKEQHLNKNLKEKKNKTTNLLLY 4640
WD40-rpts
Query 4641 INNSKKSHNSVNTNIGVNNDNQLNKQNNELVDYFLDDIVTDSDEEKTLQKRRTFDNLNLEESYEFYESEILRITKERMNK 4720
WD40-rpts
Query 4721 MKLEPGKNTSTPLFLIINNLNKILTEKKLKHISQKEVLAILNIMMKNNKIARIGGNWQPT 4780
WD40-rpts
 1 WD40-repeats found in QUERY=EG_PF13_0148 (Len=4780): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 29 1631-1744 3.16 245.14 0.03052 15.0% 8.90Multiple sequence alignment of 1 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1631-1744 KGMNLINNYVNLKIYNVEKSFRILFRLLKVNNCKDPVFLFNILWSLILKYSKYCRKKLIKKRTINKLSNNVNKNEIEKDFIFEKKRKMFLEKFGLNYLTTSEGIILYLKYIARV WD40 Template TGECLRTLSGHTSGVT------------SVSFSPDGK----------------------------------------R------------------LVSGSEDGTIKVWD---- |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |