Input parameters:

  Query = EG_PF13_0184 (Len=1335)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PF13_0184, Len=1335):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNCSGYENKTEEDTCKGDNNVRYNSKGGISKDLLYRNNDEKKISVNLTDFNFYEIEKKELTYIEISPCKSYMSICDSFCN 80  
WD40-rpts                                                                                      

Query       81 IYIYKILINDFLFLSKLDIYSTSTTIIKSIIWIKKKKKEKGKHFNFFNIDINDYILGISTICGSIIFYDINSKNIIYKII 160 
WD40-rpts                                                                                      

Query      161 TNASISSCKLNNSLEYFGICNLNGYFYLFNIYKNEEGKIYNCFDKFYDTYIKNNKYGMNHNYGVNNNIEYITNKRMRLST 240 
WD40-rpts                                                                                      

Query      241 DIDHLVDQYDERENITIDNNNNDNKNNDDNKNNDDNKNNDDNKNNDDDDDDVSNLINHVTTDNFNNMNHLNDSYAEENDM 320 
WD40-rpts                                                                                      

Query      321 FNIYIKNKFKCKEKLVCIYFMDHLKKRSYLLEKMNERIRRKEEHKKIMKKRKSIDGKFSGSNYDDKDGKYGEDGKDGEDG 400 
WD40-rpts                                                                                      

Query      401 KDGKDGKDGKDGKDGKDGKDGKDDDDDDDDDDDDEDGEDDHDDDRTNRIYNGDKFPSHRPDDLKKNERKLKRHIKSIEES 480 
WD40-rpts                                                                                      

Query      481 FYNYNHYVLLGSENSRIYKYNLSNNKYIGEFVSMNKNCIIWDVIYIYKTDEVICVDNNGSLIIFDNENYSIKYHFNNHNY 560 
WD40-rpts                                                                       (______________

Query      561 KCISLSKSFNEDYLFSAGVDRHIIKYTLRSMGKNFKINNSYYKNGNYNSQHDNNDKNMISYNEQNDHDDDINHPINNNIN 640 
WD40-rpts      ____WD 1__________________)                                                     

Query      641 IIQYMNNPKELFFYNKIKKSRKTNKKWYFTCKQSAHIADIKKMIILNNNFILTISDDLTFCFYRIENNKKIYYSIRNIVS 720 
WD40-rpts                                                                                      

Query      721 NTSMLYFSSNLKNILCVYSKQINIYYNNNYDVEKNINEKKQTYEKDKSDNKQIESTNMSFIKTSNYKHIANITFEKNEFI 800 
WD40-rpts                                                                                      

Query      801 NICKTNKKFNKIACLTNKKFSIYNFNMTNMKIYNYDISKLNFFRVYDFDFLNNDTLIVSMIRLNYDDMSKNMNSYNISQN 880 
WD40-rpts                                                                                      

Query      881 LNHTNMNNYINIEQLHIRDDYIITGRNNEQNYILSNYKNNNNNNNNNKYHNNNNKYNKNNYFINNNYYNINQNLSMYQKY 960 
WD40-rpts                                                                                      

Query      961 FSYHLVIYNVKKKKIKEELKVNNILYNFKTYNQKRLILCSDFMKNIYIFFKNSKKSSLKNCVILDEYNLFQHKNNSIWLF 1040
WD40-rpts                                                                                      

Query     1041 YFVVENFLFIVTLNNSIFIYTIDFNMKKIYFLKRTSIKNFHFNHFNEILLMNLNKEYKGTCENDSSSETEEKSNTNKANI 1120
WD40-rpts                                                                                      

Query     1121 ETSADGLCNKTDNNIHGDEIDNISKNVKQSTHNTQLGYLKYNYCLILKSLNKIELVSLNIFDDSHIEIKVSNAENLLKYN 1200
WD40-rpts                                                                                      

Query     1201 NNTFNQYYISSLNFKYNFLNIKQMYYQNKNIYTMIKNELKKTCTQNDEHMLNDKEHTWSYEQHPKNYEHTNNKNIHYDVI 1280
WD40-rpts                                                                                      

Query     1281 NLSFKKYIELKKKNIINVHFIYTRENNIIVFICVPKNIDNTLIHVADTKKYTMSM 1335
WD40-rpts                                                             

1 WD40-repeats found in QUERY=EG_PF13_0184 (Len=1335):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 22   546-587      2.94  235.95  0.04038       20.0%     32.06

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  546-587    NENYSIKYHFNNHNYKCISLSKSFNEDYLFSAGVDRHIIKYT

   WD40 Template    TGE--CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD