Input parameters:

  Query = EG_PF13_0239 (Len=1244)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PF13_0239, Len=1244):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFLASYFDRKDKVNEKSETEIEEIEYKKNNLEKVLKNALYLHKEKNVKLKDEADKKERIKEYLSSFLKKKVKDEHKMNLS 80  
WD40-rpts                                                                                      

Query       81 YFIYDENEKRNISKYSVDNFNEREEDQRGIYNLLKENKSLNNISKDMLILANYLQHDKLKNIDIISVYNIIDKYIDKYKL 160 
WD40-rpts                                                                                      

Query      161 EIDEIKKELDKEADKEIKKKQNNLDTIYNIKKKLGNIHIVEEENSNNTVEYMLNEMKIIKKLIKQKEYIICVKNTLISLD 240 
WD40-rpts                                        (_____________________________________________

Query      241 YAKKCAVNRKYDESLNIILDIVNILHIFKKNFKKQVIKNIEFFIPLLAEYYINKSKLLLSSIHWGNNISYVSTNSLEDVI 320 
WD40-rpts      ________WD 1____________________________________________________)               

Query      321 NDMDMSEDNEEIYDDMCDDNEDIYDDMCDDNDIMSDNICDNTCDDNNEKGDGTNNYYQDFENTDINYSTTFINAEKTKNV 400 
WD40-rpts                                                                                      

Query      401 AQQKEKKRRLLYYNRHMNKFHDKINNSVIFDKEYMGLIKKESLEFINILICCNYIEKINICITEEKEENENILFVKQKYY 480 
WD40-rpts                                                                                      

Query      481 SSSFYVEELASSIINFFRSFFQNDKSPLFKFDKPEWGLKYLFYQSIISNYILKMLLNYAHMENFKSNNIILKQTLEYMFT 560 
WD40-rpts                                                                                      

Query      561 YNNKYKEILRNINNIENLDRNPTSVNYKKETIAMSSVSSDVQYERDHTKLFPEHNNDNNNNNNNDNNYNDNYYRNNNYFH 640 
WD40-rpts                                                                                      

Query      641 PMSDQIKISSHSYLLDNNFNIKDRWPSKNTHIYYNTYNCMKDEDKQILFEDISNYKMVLEKLNYEIITECRLYILSRITY 720 
WD40-rpts                                                                                      

Query      721 FIHLYTFDENNKDDIKKSFLNFMQHIFLIYKKWWLYDRHNCKHLLDDFYNNTYIKLNPMENERTNQHNNCNNNNNNNYYD 800 
WD40-rpts                                                                                      

Query      801 DDDNNNNNDNNYNNNNNNNNDNNLNGINHENNINNYNVDNNTIQHLQNNELLKNRNLQLSSEENIIHMNEKTNDGVYIRD 880 
WD40-rpts                                                                                      

Query      881 FFMLNEKEFLIDILNDMSNKKCCIKLKNNIILDENDCINEYSDIFIQLLKKIKKRIWCFRNNHEFMEEYMNNVVKKLLII 960 
WD40-rpts                                                                                      

Query      961 VKDEFRFHWNNISDLIGDSEITCLLYISFHRINNFLNIYQYKKYLEEIKQNFDILEKKMFHNFLDAFYHFISIRIYNLFS 1040
WD40-rpts                                                                                      

Query     1041 VSNVFHEYIINNLYKIKKNLPDIIFIQFLNRILYKLDKTILKYLLNQNISFLQNELYFQTFINNSYILLQQIEELNCKNK 1120
WD40-rpts                                                                                      

Query     1121 KEKLNNNTGIFIYNMNLLREILKLMTDNIDTLKDKINEIKCSYAFLKNKNNWIDQVTRITNSLLKDYSSSDDNKSSHHDY 1200
WD40-rpts                                                                                      

Query     1201 KENWENKCKNTEISIIKIKMLLLRRPDIKTIAEKSIVVKEFIEY 1244
WD40-rpts                                                  

1 WD40-repeats found in QUERY=EG_PF13_0239 (Len=1244):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   195-305      3.16  245.11  0.03055       15.0%     18.06

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  195-305    GNIHIVEEENSNNTVEYMLNEMKIIKKLIKQKEYIICVKNTLISLDYAKKCAVNRKYDESLNIILDIVNILHIFKKNFKKQVIKNIEFFIPLLAEYYINKSKLLLSSIHWG

   WD40 Template    TGECLRTLSGHTS--------------------GVTSVSFSPDG-----KRLVSGSEDGT-------------------------IKV---------------------WD