Input parameters:

  Query = EG_PF13_0250 (Len=363)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PF13_0250, Len=363):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNIENKPQIIEHINYCLDNTIYDLKWVHGKSNIIAVGEMLDKKGYIHIYNLDRGKFTCISKTNLDKGVKTIAPFFSSTGT 80  
WD40-rpts            (___________________WD 1___________________)(____________________WD 2_____

Query       81 YTIACGSFDGNILLYDINNMSEEYYKIRKHTKLINKIDCKNYKNNNIIVSASRDGSVKIFDIRTKQEVVSLEPPKNSSYI 160 
WD40-rpts      _______________)    (__________________WD 3_________________)                   

Query      161 PDCWCVETGNNYVEHNAYSNMEEENLNICAGYDNGDIKFFDLRTMRLEHEVNVNNGVCAVNYDRKDTKKNKLICSTLEGN 240 
WD40-rpts          (________________WD 4_______________)   (__________________WD 5_____________

Query      241 IYIFNLDVYNEVSGYSYSKDKIISGTCWGTPFLPQNRDIFATLGGDGNLGVYKYVYPEKNSIFDEKIGCKKGIVGELNKL 320 
WD40-rpts      ____)            (_______________WD 6_______________)          (________________

Query      321 NDLNVSTQPIISFDWCKDKLGLSVMASLDQTIKIYIITKLNLY 363 
WD40-rpts      ________WD 7_______________________)       

7 WD40-repeats found in QUERY=EG_PF13_0250 (Len=363):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     7-50       4.00  279.72  0.01054        7.5%     50.03
  WD 2:  Seg  5    51-96       7.20  411.89  0.00017       20.0%     48.72
  WD 3:  Seg  9   101-141      7.87  439.65  7.4e-05       25.0%     56.31
  WD 4:  Seg 14   165-201      7.17  410.83  0.00018       17.5%     33.91
  WD 5:  Seg 17   205-245      5.44  339.25  0.00167       15.0%     57.26
  WD 6:  Seg 22   258-293      5.02  321.96  0.00285       12.5%     42.57
  WD 7:  Seg 27   304-356      6.10  366.55  0.00071       27.5%     44.96

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    7-50     PQ------------I------IEHINYCLDNTIYDLKWV---HGKS-NIIA-VGEMLDKKGYIHIYN
   WD 2   51-96     LD------------RGKFTCISKTNLDKGVKTIAPFFSS---TGTY-TIAC-GSF----DGNILLYD
   WD 3  101-141    -S------------E------EYYKIRKHTKLINKIDCK-NYKNNN-IIVS-ASR----DGSVKIFD
   WD 4  165-201    ---------------------CVETGNNYVEHNAYSNME---EENL-NICA-GYD----NGDIKFFD
   WD 5  205-245    -M------------R------LEHEVNVN-NGVCAVNYDRKDTKKN-KLIC-STL----EGNIYIFN
   WD 6  258-293    -----------------------SKDKIISGTCWGTPFL---PQNRDIFAT-LGG----DGNLGVYK
   WD 7  304-356    DEKIGCKKGIVGELN------KLNDLNVSTQPIISFDWC---KDKL-GLSVMASL----DQTIKIYI

   WD40 Template    TG------------E------CLRTLSGHTSGVTSVSFS---PDGK-RLVS-GSE----DGTIKVWD