Input parameters:
Query = EG_PF13_0305 (Len=443)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (EG_PF13_0305, Len=443):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MGKEKTHINLVVIGHVDSGKSTTTGHIIYKLGGIDRRTIEKFEKESAEMGKGSFKYAWVLDKLKAERERGITIDIALWKF 80
WD40-rpts (_____________________________________WD 1____________________________________)
Query 81 ETPRYFFTVIDAPGHKDFIKNMITGTSQADVALLVVPAEVGGFEGAFSKEGQTKEHALLAFTLGVKQIVVGVNKMDTVKY 160
WD40-rpts
Query 161 SEDRYEEIKKEVKDYLKKVGYQADKVDFIPISGFEGDNLIEKSDKTPWYKGRTLIEALDTMEPPKRPYDKPLRIPLQGVY 240
WD40-rpts
Query 241 KIGGIGTVPVGRVETGILKAGMVLNFAPSAVVSECKSVEMHKEVLEEARPGDNIGFNVKNVSVKEIKRGYVASDTKNEPA 320
WD40-rpts
Query 321 KGCSKFTAQVIILNHPGEIKNGYTPVLDCHTSHISCKFLNIDSKIDKRSGKVVEENPKAIKSGDSALVSLEPKKPMVVET 400
WD40-rpts
Query 401 FTEYPPLGRFAIRDMRQTIAVGIIKSVEKKEPGAVTAKAPAKK 443
WD40-rpts
1 WD40-repeats found in QUERY=EG_PF13_0305 (Len=443):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-79 2.91 234.75 0.04189 20.0% 18.79
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-79 MGKEKTHINLVVIGHVDSGKSTTTGHIIYKLGGIDRRTIEKFEKESAEMGKGSFKYAWVLDKLKAERERGITIDIALWK
WD40 Template TGECLRTLS----GHTSGVTSV----------SFS--------------PDGKRLVSGSEDG-----------TIKVWD