Input parameters:

  Query = EG_PF13_0309 (Len=1218)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PF13_0309, Len=1218):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGVEKNISMPLKLSEVFCTDENNIKEYNKGKNNNIDIIENVEDYKEKSKQILNKYKITEFNKKIKSDQNIYEKKNKSIDD 80  
WD40-rpts                                                                                      

Query       81 EYINDNRVNNGNIKEEHQDENIYTEKNYKNIIPSKESNLLIANGTTGIIVHNGIMCLSMKGIQPFIITSVKNSFCVYDPH 160 
WD40-rpts                                                                                      

Query      161 KLRKAFLSEYFLEDIKNLYSTNNFVYVIFKRQVYKINDNGNKKIFSDHHKYNIINILITSDYLLTYSTKEIIIWNDNNDR 240 
WD40-rpts                                                                                      

Query      241 NDFTQSDTNSELSDNEEKKDEKHVKTDNNTKGNPNSINKNNYTNDNDRNLDNNKNDPSNNKRNVKNNNKKNNIQENMPKK 320 
WD40-rpts                                                                                      

Query      321 SDYFYKSINLFDNSSDVEIKSVIHPEGYINKVIITTNENKIYLYNINKEKIIHEYKAINILCLNEEKYIKIITPTLKNEE 400 
WD40-rpts                                                              (________________WD 1___

Query      401 LCIITSSNELYILDIEKDQIVYTKNIHMNDDFVSCVSFYTYQFNDEMNYIILIGTENGKLLMINLKNNQYFIRRDVHDYV 480 
WD40-rpts      _____________)   (_____________________WD 2____________________)(_______________

Query      481 KTILVSGQGYIYTCGYDNKIHLLNINKNNFTLDIIKTRNSCIGIVNNIKYLDDENHKLIVSANMENTKEGNLFIISPHNP 560 
WD40-rpts      __WD 3_________________)       (__________________WD 4_________________)        

Query      561 EQNKDFSLNKKLNILNTTIIDFDININRHYDWNNILICFENSDRIYLASSYKKTISNEFLILPNSYSNKRQNKEKVNNEP 640 
WD40-rpts                                                                    (_________________

Query      641 FLKNEENVEEDNNADLENEEYKIYNEYETYQMLHLKKQKYATSVLISSCGHIGIVGYNDGEIHSFNIQSTTYRNEYKLNK 720 
WD40-rpts      WD 5_________________)  (__________________WD 6__________________)           (__

Query      721 YSISSKAHINGNILKLYLYGINYFVSASSSKEDTCLRVWNIYTSDLIYVYNIKNEYTNSVEDIHIVSFYHYNILTAVCLS 800 
WD40-rpts      _________________WD 7__________________)            (_______________WD 8________

Query      801 NNHTLILDIEQKCITRKFHFAFLVTNIIFSKDNRLIFFALQNNTLLIYDIISNTFVDYLLFKNSVTSMVYDDIYLYTAHK 880 
WD40-rpts      _______)  (_________________WD 9________________)  (_________________WD10_______

Query      881 NSYNFVYSFTNKNLFNKYNYYVSDYKSFHAIPIEVFSDTEDEKSYNIMNIKDLINMNEQSEDNLNNNINEKLSKHDEPIN 960 
WD40-rpts      _________)                                                                      

Query      961 ESEKNDYVNIMETYTSSENQINKNLITLSGFNISKIAYLIFLDKIKDKCKVEENVKRNDEIPFFLSTKLDKNIEYKDDKE 1040
WD40-rpts                                                                                      

Query     1041 EQFLQNVTNNLENKTSEQESQQQDEQEENQESNVESKEIVKSKHIGKNSKIQIPSSKLQEILSKNEESYIKVLKYFKSLS 1120
WD40-rpts                                                                                      

Query     1121 PSGIHYNILCLSTKEELENMMNFFIYHVKTNDNVDLIQAYLFIFLKAHGKKIMKSKEKKLKNTTKVLLQEIQGCWSNINF 1200
WD40-rpts                                                                                      

Query     1201 LFENIIFFIKFLTNIQLE 1218
WD40-rpts                        

10 WD40-repeats found in QUERY=EG_PF13_0309 (Len=1218):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 17   377-414      4.85  315.02  0.00353        7.5%     51.72
  WD 2:  Seg 21   418-464      3.82  272.43  0.01319       22.5%     55.90
  WD 3:  Seg 25   465-504      5.52  342.69  0.00150        5.0%     53.89
  WD 4:  Seg 29   512-552      4.27  291.01  0.00743       17.5%     37.00
  WD 5:  Seg 37   623-662      3.15  244.97  0.03068        7.5%     27.19
  WD 6:  Seg 40   665-706      6.28  374.27  0.00056       22.5%     55.89
  WD 7:  Seg 45   718-760      5.44  339.56  0.00165       12.5%     46.83
  WD 8:  Seg 49   773-808      5.41  338.32  0.00172       12.5%     47.50
  WD 9:  Seg 52   811-849      8.06  447.80  5.7e-05       20.0%     56.26
  WD10:  Seg 56   852-890      4.42  297.32  0.00611        7.5%     45.24

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  377-414    AIN-IL--C--LNEEKY--IKIITP------TLKN--EEL-CIIT--SSNELYILD
   WD 2  418-464    -DQ-IVYTK--NIHMNDDFVSCVSFYTYQFNDEMN--YII-LIGT--ENGKLLMIN
   WD 3  465-504    LKN-NQYFI--RRDVHD--YVKTIL------VSGQ--GYI-YTCG--YDNKIHLLN
   WD 4  512-552    -LD-IIKTR--NSCIGI--VNNIKY------LDDENHKLI-VSAN--MENTKEGNL
   WD 5  623-662    -PN-SYSNK--RQNKEK--VNNEPF------LKNE--ENVEEDNN--ADLENEEYK
   WD 6  665-706    NEY-ETYQMLHLKKQKY--ATSVLI------SSCG--HIG-IVGY--NDGEIHSFN
   WD 7  718-760    LNKYSISSK--AHINGN--ILKLYL------YGIN--YFV-SASSSKEDTCLRVWN
   WD 8  773-808    KNE-----Y--TNSVED--IHIVSF------YHYN--ILT-AVCL--SNNHTLILD
   WD 9  811-849    -QK-CITRK--FHFAFL--VTNIIF------SKDN--RLI-FFAL--QNNTLLIYD
   WD10  852-890    -SN-TFVDY--LLFKNS--VTSMVY------DDIY--LYT-AHKN--SYNFVYSFT

   WD40 Template    TGE-CLRTL--SGHTSG--VTSVSF------SPDG--KRL-VSGS--EDGTIKVWD