Input parameters:

  Query = EG_PF13_0335 (Len=905)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PF13_0335, Len=905):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MADKEYELRGFLVGHKKGIRCLSTIYSDLFEELKDRNFLFEYIISADYNGTIFVWKRFENKKGVEDVKKISNEKKDECNE 80  
WD40-rpts          (_______________________WD 1_______________________)                        

Query       81 LLYDDNFKLYKKIEIHEKIVYSLCYSKYIGIKELQKICDEHDEEKYIHIEDHLHIYSGGYDKNIYLFSLNGFIELVLEGH 160 
WD40-rpts                                   (_________________WD 2________________)  (_________

Query      161 KNSVCSIVEKSKDILISGDWNGQVIIWKIEMNKLNENCSFNNVTKNKNDNNNNNNNNNNNNKYDNNYKLNGQFNKGDVIN 240 
WD40-rpts      _______WD 3________________)(________________________WD 4_______________________

Query      241 KNNSLDSNKYRYSILKIIDNHKHAVYVTCINDFILTLSQDNILKMWDVEGNKINEIQDIHKDSVRDIILFNNNNNVITFS 320 
WD40-rpts      )          (_______________WD 5_______________)   (_________________WD 6________

Query      321 NDENIHIYDMNFVLLKQYKGHNGFIFYVCVNEKDKIMISCGDDKTIKFWCIQDIYEYMEIFLKNKSLDDHISFFKNKNNQ 400 
WD40-rpts      ________)  (_________________WD 7________________)                         (____

Query      401 TYNCLQTINLTDTMWNVKLLRNHDIVSACNDSYIRIYTNKKDKQLSRNIIQMIDNKYSKKEDILNEKNQNEYVHDISNIQ 480 
WD40-rpts      _______________WD 8__________________)                                          

Query      481 NVVGKEGDIKVFKNQNKYEAYKYEKNQWILIGDVIDDVNTNKKFYIGDDIFEQGYYDELFSIDIGSDHIKILPYNKKDNI 560 
WD40-rpts                                                                                      

Query      561 HLIAEKFCKRENISISHIKSIVDFINQNCNVNNNNNNNNNNNSVHNNQNDNLIKKKKKFNTILNVITIQQAALDKILDKI 640 
WD40-rpts                                                                                      

Query      641 KEFNSILLQQNNQYKLNNDEINSISNIIKIYKTNIKTSYLFNTTDINVTTKIFNWSSDHIFPIIDLFRILVLNKNCDFLY 720 
WD40-rpts                                                                                      

Query      721 NNKYSFNAFKLVYDCISYYINNYDNQNHTNKLDSLLLCSLRFYLNMFYLSTPRYFMFKKYNFVLKQINQIQSKNNNIILL 800 
WD40-rpts                                                                                      

Query      801 LFRIFFNYIITLNENNDKELRKILFEQIHNFSKFISDPDTLYTYSLCFHTSSEIYTKQTYEFINKYNVIDFVQNKSNELK 880 
WD40-rpts                                                                                      

Query      881 NQQNESNEKTFKNISLILEDLKNIL 905 
WD40-rpts                               

8 WD40-repeats found in QUERY=EG_PF13_0335 (Len=905):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     5-56       7.70  432.82  9.1e-05       30.0%     53.69
  WD 2:  Seg  9   110-148      6.22  371.73  0.00061       15.0%     34.91
  WD 3:  Seg 11   151-188      6.94  401.30  0.00024       27.5%     53.97
  WD 4:  Seg 15   189-241      4.78  312.03  0.00388        5.0%     30.65
  WD 5:  Seg 17   252-287      5.17  328.39  0.00233       20.0%     40.73
  WD 6:  Seg 21   291-329      7.46  422.92  0.00012       15.0%     54.67
  WD 7:  Seg 25   332-370      8.69  473.52  2.6e-05       27.5%     54.20
  WD 8:  Seg 31   396-438      4.39  295.87  0.00640       15.0%     50.23

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    5-56     EY-------------E----LRGFLVGHKKGIRCLSTIYSDLFEELKDRNFLFEYIISADYNGTIFVWK
   WD 2  110-148    -G-------------I----KELQKICDEHDEEKYIHIEDHL------------HIYSGGYDKNIYLFS
   WD 3  151-188    -G-------------F----IELVLEGHKNSVCSI-VEKSKD------------ILISGDWNGQVIIWK
   WD 4  189-241    IEMNKLNENCSFNNVT----KNKNDNNNNNNNNNNNNKYDNN------------YKLNGQFNKGDVINK
   WD 5  252-287    -Y-------------S----ILKIIDNHKH---AVYVTCIND------------FILTLSQDNILKMWD
   WD 6  291-329    -N-------------K----INEIQDIHKDSVRDIILFNNNN------------NVITFSNDENIHIYD
   WD 7  332-370    -F-------------V----LLKQYKGHNGFIFYVCVNEKDK------------IMISCGDDKTIKFWC
   WD 8  396-438    NK-------------NNQTYNCLQTINLTDTMWNVKLLRNHD-------------IVSACNDSYIRIYT

   WD40 Template    TG-------------E----CLRTLSGHTSGVTSVSFSPDGK------------RLVSGSEDGTIKVWD