Input parameters:
Query = EG_PF13_0346 (Len=128)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (EG_PF13_0346, Len=128):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAIEP 80
WD40-rpts (___________________________WD 1___________________________)
Query 81 SLAQLAQKYNCQKLICRKCYARLHPRATNCRNKKCGRTNQLRPKKKLK 128
WD40-rpts
1 WD40-repeats found in QUERY=EG_PF13_0346 (Len=128):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-60 2.78 229.44 0.04921 30.0% 13.15
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-60 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
WD40 Template TGECLRTLSGHTSGVTSVSFS----------------PDGKRLVSGS---EDG-TIKVWD