Input parameters:

  Query = EG_PF14_0055 (Len=966)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PF14_0055, Len=966):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNQNGEINTKNNEGKNKEQNKDGDKKKVKKLNYDKDELLENDVTKVAGEFDEEKEGNQEMKSFEKMTEKSKKKKDSKKMK 80  
WD40-rpts                                                                                      

Query       81 NMKKMKKKKKLEKMKNLINSTNNSNNEKDENDFIETFKKKNKKNIKKDKKKTKDTDYEDTVVSSEIHDVITGAGDNSNIY 160 
WD40-rpts                                                                                      

Query      161 INEEIDESDDEYNINTLGNFDLKHYEDFDIIGYDIEGKKIYKSDENLIDDFLNSQRDENHWRKIKDVKNNRVVQLTDADL 240 
WD40-rpts                                                                                      

Query      241 QIIKSIRENKVATILNDANYIYENDKEEYKLYPSGIINQKKNEENGSVHERKKISKIMNYLRNKEKYPERYKDKKENDED 320 
WD40-rpts                                                                                      

Query      321 YIYDLWNNRIYDEFNNINEISLPHILPGHKYSYNPPPELMLSSSEKRKLLKNNKDAFIPQNFKNIRNIEYYKKTYFDLYQ 400 
WD40-rpts                                                                                      

Query      401 RCLDIYLCSRTLKNVLHINKEDLLPKLPSKKSLKPYPECAFVHYVSNVEEDEKTVDDINKKKMNKNISSYLYPIDINEND 480 
WD40-rpts                                                                                      

Query      481 HCVYTIYHNKLYIFDILTSYNIATIDLLHYFKSVVPLKTKKKSIEEDIHNNIIIKVNKAYSILAISYTNVVFILHYESYV 560 
WD40-rpts                                                                                      

Query      561 PPLKSKCETFVDNIYDTTNSDVKRKKPKNGEGNINKANKSKNDALEEESILEGDINDKDGSYHGNNNSDDDGDDNFDDDD 640 
WD40-rpts                                                                                      

Query      641 ENFDDDDDYFDEDDYENFDEDDDNFQSDESYDAGTNNNTENTNNDDISKKKKQVHINRNMVYYKTKGLLSVYHSNFKNSE 720 
WD40-rpts                                                                                      

Query      721 DYCYSKDINVKWMLLKSNHKKIKYCVAIKHEGEIKDISWNNNGNYLSVTCMRNIGQYNDCYLHHMKTMKSIKLIKKYKHK 800 
WD40-rpts                                                         (__________________________WD

Query      801 RGNIISTMFFPRSPYFMVAFENNITIYNLKATNKKERIFKKLRGVQHITSMDVHTNESYILVSDSLGNVFIFDLDLSCNP 880 
WD40-rpts       1_________________________)      (_________________WD 2________________)    (__

Query      881 YKKFHLQECPLKKVQFHKSYNLFYSLGDNGKINLFYSKFFQDYITNPVLLPIKEISNESKIVDMVWSEKKPWFFTYTQNN 960 
WD40-rpts      _______________WD 3________________)            (________________WD 4___________

Query      961 FSVLYT 966 
WD40-rpts      _____)

4 WD40-repeats found in QUERY=EG_PF14_0055 (Len=966):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 16   772-828      3.83  272.84  0.01303       10.0%     45.49
  WD 2:  Seg 20   835-873      5.65  348.20  0.00126       12.5%     49.22
  WD 3:  Seg 24   878-916      6.87  398.33  0.00027       12.5%     44.90
  WD 4:  Seg 27   929-966      4.31  292.66  0.00706        5.0%     44.68

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  772-828    RNIGQYNDCYLHHMKTMKSIKLIKKYKHKRGNIISTMFFPRSPYFMVAF-ENNITIYN
   WD 2  835-873    -K------------ERIFK------KLRGVQHITSMDVHTNESYILVSDSLGNVFIFD
   WD 3  878-916    -C------------NPYKK------FHLQECPLKKVQFHKSYNLFYSLGDNGKINLFY
   WD 4  929-966    -L------------LPIKE------ISNESK-IVDMVWSEKKPWFFTYTQNNFSVLYT

   WD40 Template    TG------------ECLRT------LSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD