Input parameters:

  Query = EG_PF14_0062 (Len=1527)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PF14_0062, Len=1527):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MMYTFEKKEEERYLTKAIYAYGINKNIYNPFYILDDNSIFYCVGTNGVLHSIIEKKQKFLLSHESSYGIICLGISFDKKL 80  
WD40-rpts                                                                                      

Query       81 LALGEKSVNKPYISIFSNGTHKLIKRLTLDISDNGSRIMNICFSSKNKYIYCITNANTKSLFLCYDWLKEKLMFSKIFPF 160 
WD40-rpts                                                                                      

Query      161 SLFSNICEICINPHNSSYIALLSIGILKNVIDIDPINDEEKTEECVSMDNDKKKKDRKKEDVKNKDNYNVNCNNNNNNID 240 
WD40-rpts                                                                                      

Query      241 INSIDNMDDTSSNNEVRNIFLYHNVDKNLDDIVIKNKKLEKIDNNFTNCCWLNDGILLLINKNNYIIFYDVKKEKLKIYN 320 
WD40-rpts                                                                                      

Query      321 KHVSSKEIIKVISMTKGFAVFDNYFIYVYEKSSDLSMSLCYLLKYYVRFNYNILYNSYCLFSPCEKMLYFLEKDGNIKRY 400 
WD40-rpts                                                                                      

Query      401 DVAKRKVAFVNNEKVNYESLRNKTNMKEDLKTTKKEFDDTNLINNNNNNNKNNNYDKINCTSYIHNSCNGSFSGDENGKE 480 
WD40-rpts                                                                                      

Query      481 EDHFDLETVVYNIGSSKINDFDVCLKHPLIILCYDDNMIRILNYRKKEVVLENSFNNEPLHLSIHCSGHLLMVAFTDKLR 560 
WD40-rpts               (______________WD 1______________)                                     

Query      561 IFHILYNKLKIKKEFFLKNCSCCKYSNGGNFMAVSKISTIYIYKTYTYELLYVLKSHVNYISDIIWSSNDFSIFSIGQDG 640 
WD40-rpts                                                     (_________________WD 2___________

Query      641 YFFEYSLYNNGNKMIEVLQKEKKFLCIDLEFLDDMNKKNVNGEGNNLDKKQKKYDNEYKSLNNLTSNEIKNIYISSDDKT 720 
WD40-rpts      _____)                                                                          

Query      721 IKQFCNSKMECVLECEYIINKILLYKNKFLIATYHNGYFSRIRFYTLPLSGIYLEIPCHILNCVNLKFDINMELLFSCSK 800 
WD40-rpts                                         (____________________________________WD 3____

Query      801 DGSIYIFSIEKVENAFIFSQNMKNNHVDTNKNIYPNGNKYNLHDQNDTINLYQHNNNDNKTNETHADDMKKKRDILNNDD 880 
WD40-rpts      _______________________________)                                                

Query      881 IDKINKIENKKKNVHMNNGEDNNNNNRDDDLKNGSENMKNNYNNSNNSHIFNSPIQHNDGGGHHDHLTSPKELCLSDLNN 960 
WD40-rpts                                                                                      

Query      961 DSFKNDDNKNVNLSKEQMKLLQNNILLYDLSNKINYSLNEEEKDNEEILIDFFYVQKKNKEYLELEKKINNLKNQMDLEM 1040
WD40-rpts                                                                                      

Query     1041 KNKESIYKNELKKLKKEKNLEIKNLMKINKSLVKEKEKMENTCKESLYELEEKHTYFVNQLNSQFYLTNKISEEKFLKVQ 1120
WD40-rpts                                                                                      

Query     1121 EEFNLYKKNSTTEILELKNQHQIQIKELQREKDEQVQKKEDYLQNCILKYDNLQKEKEQYIKQMEEEVDEEILMITKKYE 1200
WD40-rpts                                                                                      

Query     1201 NEIDQLKKDKYDLMGKFKLYEHIESELKENIQEEKDKFIKNNITAKRLHENIDNLKVDLSNLKDNIARKEKEIESKNSEI 1280
WD40-rpts                                                                                      

Query     1281 MNLNKKNEELEKVKIVLTQKIKNLESNLSPKESEIKVMREKIDEMAKSFENNHKKRVNLQIEINEYKMKIKFLHDDLLNY 1360
WD40-rpts                                                                                      

Query     1361 NKTIMNYEKILKNLQDHIKECYLHLHDKKIFNSSFLNLYNKFHKVNDVQNYDAKNVFSEYIRQKEYLENMIEVLKDKLHK 1440
WD40-rpts                                                                                      

Query     1441 ETEAFRNEKIKMMNENSLLLKEINDLKMDLNFLKSECHEAQLQNRKMKFLKKRSESKERKKEKKEKKEKKEKKENKDNNE 1520
WD40-rpts                                                                                      

Query     1521 EKNIDIK 1527
WD40-rpts             

3 WD40-repeats found in QUERY=EG_PF14_0062 (Len=1527):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 28   490-523      3.67  266.16  0.01601        7.5%     30.55
  WD 2:  Seg 37   608-646      6.21  371.14  0.00062       20.0%     46.35
  WD 3:  Seg 46   756-832      2.93  235.75  0.04063       25.0%     51.14

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  490-523    -------------------VYNIGSSKINDFDVCLKHPLIILCYDDNMIRILN------------------------
   WD 2  608-646    -YELLY-------------VLKSHVNYISDIIWSSNDFSIFSIGQDGYFFEYS------------------------
   WD 3  756-832    NGYFSRIRFYTLPLSGIYLEIPCHILNCVNLKFDINMELLFSCSKDGSIYIFSIEKVENAFIFSQNMKNNHVDTNKN

   WD40 Template    TGECLR-------------TLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD------------------------