Input parameters:

  Query = EG_PF14_0087 (Len=566)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PF14_0087, Len=566):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNKKGNKRPLGESLNVPLNSNILNEDNEDKKYVYPSIGNFPIIINNDMLIYGYGKYLLFFCLKDMKFIKIIDDHQSAIRS 80  
WD40-rpts                                                   (__________________________WD 1____

Query       81 LDKFKEGNFFLTTGDDKTIIIYDKNWCKYMKILHKKKIVKAYFLKEVQESEHFKILFIDKYGDIYIYKPPENLTNKNNNK 160 
WD40-rpts      ______________________)                                                         

Query      161 IQINDKDDNYETVQLLYLYDSLNDVEAKDEDIFFMKEFDQEFHEDILLKDSDDDEKNKDSVNYDKYEQNDNCVDKCVDNC 240 
WD40-rpts                                                                                      

Query      241 VDKCVDNCDDNYVDNCDDNYVDNCDDNYVDNCDDNYVDNCVDNYDDNYENILNEKNKAININSIKKKLEIHYAECFKNEN 320 
WD40-rpts                                                                                      

Query      321 LLYPIHTCNSSVISLYYDDKFLIIGDRDEKIRIIKNKKIHKIYNFYLNHKLFITCVELINEHIFCSTSADCYVHLWNIKK 400 
WD40-rpts           (____________WD 2____________)    (________________WD 3________________)   

Query      401 KEVVDSLYLDMNFLCKYVQLSSLFPNKSNTENYKFLISILYFHKKSFSLFAIIENVKGFLIIPLKEQKENNNDNNNLMAF 480 
WD40-rpts      (___________________WD 4__________________)                                     

Query      481 DEEKIYFYELKEHVLSFTFLSLNNQKDVLLFVDREKGYLHKINLNDDNSLSKDIKIFPHSFFNSADMIDIGLINYWKHTT 560 
WD40-rpts      (___________________WD 5___________________)                                    

Query      561 IEGIIN 566 
WD40-rpts            

5 WD40-repeats found in QUERY=EG_PF14_0087 (Len=566):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    46-103      5.43  338.95  0.00168       12.5%     28.87
  WD 2:  Seg  9   326-355      6.16  368.94  0.00066       22.5%     38.10
  WD 3:  Seg 12   360-397      6.15  368.88  0.00066       17.5%     48.03
  WD 4:  Seg 16   401-443      3.77  270.58  0.01397       12.5%     12.31
  WD 5:  Seg 21   481-524      3.15  244.65  0.03097       10.0%     39.86

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   46-103    NDMLIYGYGKYLLFF-------CLKDMKFIKIIDDHQSAIRSLDKFKEGNF----FLTTGDDKTIIIYD
   WD 2  326-355    ----------HTCNS-------SVISLY------------------YDDKF----LIIGDRDEKIRIIK
   WD 3  360-397    -HKIYNFYLNHKLFI-------TCVEL-------------------INEHI----FCSTSADCYVHLWN
   WD 4  401-443    -KEVVDSLYLDM---NFLCKYVQLSSLF------------------PNKSN----TENYKFLISILYFH
   WD 5  481-524    DEEKIYFYELKEHVL-------SFTFLS------------------LNNQKDVLLFVDREKGYLHKINL

   WD40 Template    TGECLRTLSGHTSGV-------TSVSFS------------------PDGKR----LVSGSEDGTIKVWD