WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: EG_PF14_0101 [Plasmodium falciparum] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = EG_PF14_0101 (Len=4405) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (EG_PF14_0101, Len=4405): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MKNMRNDRLSGTPWDNVKTLKNCQVDLLCSYDLHKGVEHKLISFALNLLCVSKKYELIFISYGQYIYVYEMNKFINNSHF 80
WD40-rpts
Query 81 FMDKNENNKYKFQYYFNNEEIKKNNSVFKNMNKISYIYEELKKEFYLKKMNIPCPSLILSPHLYSKGYVNIKCEENEAMN 160
WD40-rpts
Query 161 KSILISVGWSEDTNVYYVEKIVESINTKQKIKKVLENNIYDFFQKYENIYNDQYVPSPLFSNISKDPYYFLKKLKIDEHH 240
WD40-rpts
Query 241 FLLNILYNNDNDNYNNDNIIEPYNNHYLNSKSKNKLDTLMCNPFIINEEYLANYSNDIVDMIKFSKISNYFDYSKNKIKE 320
WD40-rpts
Query 321 KRNMLFYKYHENRKRKALSLVSKEKKKKKKKKKKLDNSNDKIDQIINVETINNFPNNIEHIDQNNKIYDIHDGDIMDPNS 400
WD40-rpts
Query 401 DDDIINHIQNDIVNNDRLGDGNMNHVNKSNERKKKKKVNIMENHTYNEKEKKRQKIDILKIKKKNNMYNEDVSKTSHTGV 480
WD40-rpts
Query 481 LKMENDKMYNEMSETQREKKKEKCIKRKKQKCKFRISDIYSSLESEEEELEEELRDEEKHDEKHDEKHDEKHNDNKNNDK 560
WD40-rpts
Query 561 NNDKNNISCKDLKNSKMKKRKKIRIKRNYKSTYKNLHCNNYLDYGEKEVDQLDFYNKLRKKVYIGYNLRNNLELNEKNDY 640
WD40-rpts
Query 641 INTFRMKNHFINEYMKSSSDDEINDDNINEENFSLNLNDTNMDMINRKEEKNRFYTRDYSSSDTSNYYPIHSHDDNYYDS 720
WD40-rpts
Query 721 YHNVNTYNLHRKKYHYKPFENIKKFKNKNPYFYPQRKYEIHVKEYKGKNKKRQLKRLNKNIKNYMLYTKQLNKLKEERKA 800
WD40-rpts
Query 801 FINFCKSYIKNKYYNDYSRRLETFLDPYNKIKYHNIWKGFNIFTFNLFNVDYNDKILKSVQIYIQPDIVFNNKMYIKSDT 880
WD40-rpts (_________
Query 881 STWAISFNFKKNLLAIGSNTHNIHIYNLNNFYYFRKRYDYDEAIDYFRNMFIHNNIKVGELFENDKGCAFLYEDIYYRNV 960
WD40-rpts _______WD 1_______________)
Query 961 AQTNSPNDNNRVQDYNNKEQNILHEYSETKENKMKNKNLSHDCTKGKKSVLPADNIINNILIRKTTIPVDLSLFFIFRKE 1040
WD40-rpts
Query 1041 YLKSVLITISQNFPVDSLLLILKQAYIGKEFYNIQWDIYYNMKKFMLRIKKMYSNIFLRRCNVPLNLFDSNTLQVNSHNL 1120
WD40-rpts
Query 1121 LKNGYIKSLYQYFLLYSHYEDAYNKYNITKEQIKKKEKRNNIRKKKLKTLLNTYHGMNKNSLNVICKKYDNLRMYAEHAK 1200
WD40-rpts
Query 1201 DFLSQYIYNSKTKNESELILFNDDLFIQYSSDEEIMNDNNIIYRKYKNYSLLRIEKCYADYAFSKLCRMNNNNNNNNNIN 1280
WD40-rpts
Query 1281 KVSSFFEKKCLFSRSYIYCYRKANIVLKKISNCFRDFIKARHNNNFSFKHQLFSNDDAIFIIQFGNEIKKKKKKKVCKIS 1360
WD40-rpts
Query 1361 RNYKQAPLKYIKKLKRVIKYIQINNMSPNDLRLCSRNYININNNEKEFFKKKLLVICELRDHNNNLLDIIHLSNGLKEEY 1440
WD40-rpts
Query 1441 SDLLEANASYKLLNYEGFSRSIDYDDDNVDDDNVDDDNVDDDNVDDDNVNADNVYVDNVNVDNVDADNVDVDNVNVDNVN 1520
WD40-rpts
Query 1521 VDNVNVDNVNVDNVDADNVDVDNVNVDNVNVDNVNVDNVNVDNVDADNVNVDNVDADNVNVDNVNVDNVNVNNEGDNNIS 1600
WD40-rpts
Query 1601 VNNVDALYNIGVHDDDDDDDDDDDDDDDDDDDYDDDDYDDDDEDDDDDNYKRKNNFRIFKRRYLNKNNYLLEKKRKELTS 1680
WD40-rpts
Query 1681 TSLMKENHLSGIINNTIDMEMNYMTYYKGHMNKLKKDKRRSNKDICVRKYNTSYDINDESFSYSSLSCSSSSFSYDDNNM 1760
WD40-rpts
Query 1761 VDNNLPYKTNYSFVNIPIAHGVPYTNTPLNNSSLQRHNTILRNRINSSIENSNNNNNNNTIPSTQHFRLFINNPLSNNLT 1840
WD40-rpts
Query 1841 AVESNVPNRRSNSVGHNLYTYINNMLYNPNNTLNFNRDMNVVNMMGRTFDISRIGNTRNTNAQNYQNNMDNRNADCNNEN 1920
WD40-rpts
Query 1921 QTMNEQNEGYYLNVEVIPGSMHLQDNVQNGQSVNIQNGQSVNIQNGQSVNIQNGQSVNIQNGQSVNIQNDQDINDQNNKD 2000
WD40-rpts
Query 2001 INVQNDKDINIQNGQSVNGQNDEDINDQNNKDINVQNGQSLNVQNDLHANVVSSNAQNTNTDNSNNNIINNVINIRHTNE 2080
WD40-rpts
Query 2081 QNNVNNMNQNNNNNNNNNSDNINMISNISNEMRNVPNTNRQPLDIEYRFLDMIYNNILNSRNERRNITTSLNTRNLPFNR 2160
WD40-rpts
Query 2161 NNVIISRRNNVSNIPTQDISEDMIRNMIAISIGNMDVLNEKKPLNNFVKGIAKNSNSKINKKRMIFNLIPLNWKNVCTKK 2240
WD40-rpts
Query 2241 KYDVKIKYIYTLSDCADKILQKYKKNDQLDLDFVVICEGLCEPSMQNTQKRNENKLQDDKRGENKIENDEMKDHKIDDNI 2320
WD40-rpts
Query 2321 KENDEMKDHKIDDNIKENNEMKDHKIDDNIKENDEMKDHKIDDNIKENNEMKDHKIDDNIKENDEMKDHKIDDNIIENDE 2400
WD40-rpts
Query 2401 MKDHKIDDNIKENDEMKDHKIDDNIIKNDEMKDHKIDDNIKENDNIKDNFILEEQNLESQRTLIMINKEDDIRDDKKKNE 2480
WD40-rpts
Query 2481 ESEQNIEEYFCSKNNESSENNLNNSYACFMELNNNKMNDNNCIYDEHIRYNETEKENIKNTIPGKENEINTIMLDKEYNN 2560
WD40-rpts
Query 2561 SIIENKENISSKSSSYDMYDSYSISSNGSSDSNLSSDMNEFNFFSSSEECSECEYNTLCLHNSSNINSYSVYKFLKKDNS 2640
WD40-rpts
Query 2641 ILFVNNCNVKIKGGEGIIKEYHLKGYKRNKNMNIKNMHSRNKNKKYNRKTKLIPLKINDMEYKYIVNENNDIFISEPFFS 2720
WD40-rpts
Query 2721 IKSKYLEKILLQEGYYKFEENEMNEIQYVNERITKGNTYVNTKDIITSFNSNEKKDQNIYCSKMKYNEGKNNINENTNEN 2800
WD40-rpts
Query 2801 VNSCNSFVNMKNIGDEKKEMLDISVLPKKIFNYNISAFIQYMSKKVCNYLFDEHHLKYFNNVSKKKRNFFIDNVYKKKNI 2880
WD40-rpts
Query 2881 YEGTKWNSDIYWTLSNVSFYTADWYDILYRLFFDASSRFYEMLLKHHTHNIPCIKFSPDDNFLLSCSVDKSISLWYPNNV 2960
WD40-rpts (_____________________________WD 2____________________________)
Query 2961 KNDKLENNYNIYDNLFPYYKNEKKKNSKKKMTKHNKTSSSYNDNFNHIFQELDGSYETYDIFMDDNNLMCNNMIEMNINK 3040
WD40-rpts
Query 3041 KIVKVKNEMKKKKKKCSFEKLYNETKRWYINKEKELVEQKRSNILCKQELKHMGWSGDFIIKKNVKKMDFFVDIFFNIPS 3120
WD40-rpts
Query 3121 NIYKDNFICSQYFPYTNKPLNNFLNIFEKYSLFELFKLSFLNIQRKDEKIGNIPSNTNMSNLVNYLLKMNSKKLKYMKEN 3200
WD40-rpts
Query 3201 NIDNIVNLLTQGELCINRNKVKNEKEGEKDYMDNEQKDERKRYKRKTLKRIYVAMKYACRHMLKKYLLFRPNNYKEKNYN 3280
WD40-rpts
Query 3281 TKKNMLSSEEIFLNNNKVPLLTDYDFNFSSDTDDEHISYKKNKTKDINNNKLPDSFTYEHNELKKKFHNLHYQQNISDEE 3360
WD40-rpts
Query 3361 KSSSSNDEFSSSSFHYISSSTRTYREGKNLSKDINESDEEYIKKKKIKESLFYKYINKIRREFNSNYVLYRNEKNVMLKN 3440
WD40-rpts
Query 3441 KWMYFLQKLLNQYIHMKCFKKVYAHIKNKLLLNAIRKYKKHNNHKLYFNFHVTTNYKESKILKEVLQNYSTYFDKTNKTK 3520
WD40-rpts
Query 3521 FDNNKNDYKMVNKKFMSYLTLIKKKKLFKKTRRGEQKLNNLNVFQPLCEHINNNNNNNNNNNNNNNNNNCDNNNNNNCDN 3600
WD40-rpts
Query 3601 NSFINNHNYCYNDNRGYTLILKNNVSNFHNIIHNIINISNHNKIIKHSKYLKKYHPHDNNQNIPLCKKKNSKNHQNNHME 3680
WD40-rpts
Query 3681 KYNFYREKLCTDHEKKKKKKNTFNNIFNDFNKDIRKGITFYSASDSLNSDINEFSYKGKVKRMIKRKKKIKKLYVALSSK 3760
WD40-rpts
Query 3761 KEKTNLYNNNNNMEDSFMIKNDNIYIDKKKMGDNNHSYRNVTLHKHDEKNNNINYNRFHPFNNVRCLKKENIKEHILMKE 3840
WD40-rpts
Query 3841 KKKFNICFLNLNKGNYQINYFSNIGIMKKFYKFCGKGLILVNVQYINNDTEKGKKENIHINNNIKNLNLKENVDVLNKRH 3920
WD40-rpts
Query 3921 KKNIIFQTDIYICSTYKGNKNIKKKKSRTIIFIIKVNVEELKIYLCRKKIFEEKYINNSFYIHTKVVQIIYFLTLQNCKI 4000
WD40-rpts
Query 4001 YSSHNNNNNNNKTEILNVHNYNVNYNMDYSNIDEKSKQKLLKYYLSNDEYMFFQFLTSNLFEKNNRYKNIKPKEIYKNIV 4080
WD40-rpts
Query 4081 KIRNYIFNVKEDDKYEQYMNLLSTCEESNIEIFKDLYNQCRNNKYQSISFNIFFSLLSNYKKNILMLNVSTLRFLYSHMK 4160
WD40-rpts
Query 4161 SEHTNNTNQEKKSQKKKKSSKKKKKQKKNICCINKDDYIYNNIINKEQKKELNKYLILCADKCNIYLLKFKFTKITRNLF 4240
WD40-rpts
Query 4241 TTKFLPLSIQKIPKEEYETFKQAFATSRISLLKIIYERSCIILANQYSNKIFIYFVQKCMYTNTYFLIPYFILPLYTLSI 4320
WD40-rpts
Query 4321 GRKLTPNFNRDKLNCHKKYIINNINYNLKRLLDGKSLEESKDNDFCIAGLDVIYVNKRDDTFELTVYVLLLSNIIFCYKV 4400
WD40-rpts
Query 4401 NFEYY 4405
WD40-rpts
 2 WD40-repeats found in QUERY=EG_PF14_0101 (Len=4405): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 19 871-907 2.79 229.75 0.04875 17.5% 34.31 WD 2: Seg 51 2894-2956 7.89 440.54 7.2e-05 32.5% 35.33Multiple sequence alignment of 2 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 871-907 NNKMYIKS--------------D---------TST---WAISFNFKKNLLAIGSNTHNIHIYN WD 2 2894-2956 LSNVSFYTADWYDILYRLFFDASSRFYEMLLKHHTHNIPCIKFSPDDNFLLSCSVDKSISLWY WD40 Template TGECLRTL--------------S---------GHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |