WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: EG_PF14_0123 [Plasmodium falciparum] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = EG_PF14_0123 (Len=3218) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (EG_PF14_0123, Len=3218): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MEEEKLSDRYVSFQNNPKQLNPSKKFFEWIFNYPLFNEFRNSSVSNHFSSLCINEREAIIEKSKAILKRKNYKKENIHFN 80
WD40-rpts
Query 81 IKRQDASPKVLMKYEINQNDYSLINKNKFYVNIIKKSEKIYKCYENVIKEEKRKKRVFEKIKQKYLFRKKKQDLINYVHS 160
WD40-rpts
Query 161 PPNDIDTNVNKKRDTISKEEFNPFFNFFENDKNKNIYHSNINFTMKTHIQFNKYFYKLIINKLSYYKIKKDLYVNIVNIV 240
WD40-rpts
Query 241 NEITKYYPTYGYDILNNIKIKYFPYKNINHSFYIYGLVFSNCSIYFDDLEIKNPKILLLNAERKIKYDVLESYFNHNYNY 320
WD40-rpts
Query 321 TYLFWKNLSNKNINIILVYGELDYYIKKLLLSKKIYFFTSIKKKNMSRLSNLLCKNILSYENIKNFDVSYIARANYFKIQ 400
WD40-rpts
Query 401 KYKKNVKNIFLCCNNKFLTICIFGKQDIRDDNITSEMLKKRKGNKNECYVYSYDENNSYDNTCLINERNRYDYLESMHNN 480
WD40-rpts (_____________________WD 1_____________________)
Query 481 VDVLLKKEIEKENILDNFINVYYKNKKDDYIIDYYFVNKEKKINLYEKDTSIQQNKKWVLINHLKNIVIIKKVKKILQFC 560
WD40-rpts
Query 561 ILLTFHIYKQMYLNNYMNRSFISLPERNIKKYTNVSNDVFYQNLNLLIISSSFFFYYNNEIGKKKKNNNKNNNNNENDNN 640
WD40-rpts
Query 641 NNNNNNNNNNNNNNNNNCKRKKKKMTPINLMSNLFHLINIPNPLRRERMKALSSIIKSNNIIKQQIYNNYEHCFFNNSEK 720
WD40-rpts
Query 721 NKIINIVNYFLFNSFMKNCDITYEYLYYYLKIINSIYLNYNNKNIILDEELWLNQVQIFNIQSNPKNPIGIEKKMNEKIE 800
WD40-rpts
Query 801 DVIKQNILYYCYNFESAKNIEMIIYFICPNYMYINNIYNNINMYMFDNRHKNSKRLFYNFFFNHKYVFDISLQQFVYIIH 880
WD40-rpts
Query 881 SLSSKLLCPFDMCKNYLCYHQMCIQIFLRRVLILFKKEKNEESEEGLFLKIICEKCNSVEERDMNINISFIEFILCIIYS 960
WD40-rpts
Query 961 ENYTNLYCNHNGVNNSYVIHFRNIKISFHMYENNIYKSIVRKRKGAIDLYDKTQSIMKYEKNKKHKNIYKNIYKNMYKNN 1040
WD40-rpts
Query 1041 YDLVGNIYCLNKSKGTNHIINNVKRNIKLYIKKNIKNIIYNDIFYYFPCKCLTNILNNYSNKNEVENENLYSNFNLYNII 1120
WD40-rpts
Query 1121 ENFPFFNSSMLPLYSSFKFLIYNCAIHYYRSKNKDMYKNKKKHHRRKKKKKKKNYNNSNSDSNSNSNSNSNKYVKSMKNS 1200
WD40-rpts
Query 1201 QNTNPIDSCSPLYFKNICDKCKFIKIKNFCALLFFNILFIMKRIFYNYYIMINFIITLLNKNMFIKRNQVYRLIKMYSSY 1280
WD40-rpts
Query 1281 DPMESNYLLIKQGDNTKERLKKNLSKEDISKMNLLEVSNTTNIIDTMKKTYIHSNNTLELDNNILNINNILNGKISTTMF 1360
WD40-rpts
Query 1361 DNNKTDVLYDHIYENNNIDKSQNYNYYNRNIIKETECNNMKKTKEIFINEYFIYKMFKKQMTKYKKYLINVFTNFYYYAI 1440
WD40-rpts
Query 1441 IELMYNKSLSLDIEIFFSIYIIILERINQSILNVIENMENYKKKGNIENVHNTILTSQFTKKEYHMPIFFYEHINEEENE 1520
WD40-rpts
Query 1521 IISKDRTNIKTNSLLQYNEGVYNNRNFIMKNKRKKEITLLFNIMNCYNNFNNTLHLKKENNQIIDNTNSVINGEYDILKL 1600
WD40-rpts
Query 1601 YTKERNYLYNIESCRKKKNIYMYNLYNNDENETNNQNLFYHYIGRIIDRGRYIIFEDMKKKRKKKRKKKNEQEKNKEHEK 1680
WD40-rpts
Query 1681 EKEKYQEQQEEHKEEATRGCYFFVFNPNDTSNIIFHSLLSDVYKNKLKVIYEKESKKKGGLKIKHTNNKMKTDSYVTTYD 1760
WD40-rpts
Query 1761 NNNNNDNNNNKNDNSNGIKMDAYHTTYDYNNNNKIKMDAYHTTYDNNNNNIYFYDDDDNLIVRRKRNIHDSESEIKNISF 1840
WD40-rpts
Query 1841 ILGNTLNCYNINTYIKRCINNLCLNLKNDDIDYYINCKNEDILTINLNETICVYIFFPLQFHYLRKLLCDKEEDFMKSLK 1920
WD40-rpts
Query 1921 KSNFINFDHKKRHFVKTYDDRFIIKEINKYEFKSFINKYKEFFQYFSDIVLKNKKSLLCYMYGLYQIEIKKKNKKNMKTY 2000
WD40-rpts
Query 2001 IILENVKIENPNSKILIFDIKGARKKKNLQKLIKQKRKTSFPFFFFRRNESYSLNTCKITEDKYMSDDCSSSISENLKTF 2080
WD40-rpts
Query 2081 RKYMNREKHLKDTILQERKDDECSMIYNKNSYLEFLSLDNTKEIKNKISSNIKDMSDESLSFIPNCEYNNSEDYVVHLME 2160
WD40-rpts
Query 2161 NNNIGQKNEEIQEGMQEKMKEGIQEKIQEGMQEKMKEGIQEKIQEGMQEKMKEGMQEKMQEGIQEKIQEGMQEKMQEGMQ 2240
WD40-rpts
Query 2241 DKIQDKIQDKIQDKIQDTIQDTIQDTIQDTIQDKIQDTIQDKIQDKIQDKIQDKIQDTIQDKIQDKIQDTIQDKIQDKIQ 2320
WD40-rpts
Query 2321 DTIQDKIQDKIQDKIQDKIQDKIQDTIQDTIQDKIQDTIQDKIQDKIQDTIQDKIQDTIQDKIQDKIQDKIQDKIQDKIQ 2400
WD40-rpts
Query 2401 NKIHHEIEQYHNINVINEEETNIEIRKDERSPCIFINRLNMEGLERKPREDMNTKYKNDDINNNDVKDYGKDKSKNKLLS 2480
WD40-rpts
Query 2481 NKNKVKQINQEKINKMFKRIRKKIIRGIINVCTIPRIISPIKLYNFTMKNTHKHKKKQKKNSKYIYIYKNNNRLKHDLSY 2560
WD40-rpts
Query 2561 HMDNNLQRCKNENVFIKEILEDTKMYILLNRSIFKMMNRKKMLREDYRNNLRNVYLYGPMVSLEYLVTKRFCLQNKNKNI 2640
WD40-rpts
Query 2641 KDMKDICINDTNNMISNNNKYKSEEGNVDNKKENMDDSMYYYYYYYHSFVGNGVGNNMNVDNSSNSIEKYNNLTIDNYNA 2720
WD40-rpts
Query 2721 LKNYNVLFDDNFRDYIKSKVINLEYNDYKYLMDSLNEDTNFLCSQDIMDYSLLIHIDIHNYEIIFKIIDYLRPYTWDKSV 2800
WD40-rpts
Query 2801 ENFSKSVLYLTKGYRPTIIQSEYYKKRFLSNIKKYVFYYVPIYSFKKKVVFKLSRGQNREFSIIQLNKKNPYQKYFSYNL 2880
WD40-rpts
Query 2881 FNLILRYYNNFYLYKKYYISSTISCDLKYNQNWYYIPISKDIYCKKNIYIFLSYFMKEYYIQYIQNNNKYQHNHFMLTNL 2960
WD40-rpts
Query 2961 INIMKSTIYENDIKSNTLDSTNKYEDKIKNIIECIDKFVYKKGNHINDHICGDICDDICDDICDDICDDICGDICDDICG 3040
WD40-rpts
Query 3041 EICLNNNQKDRKEHFYDLIIPYSSQEQYNNIYDINNKNMEILYPYYNNHYVEKHSKLGPYIILNTDSYFYNQKYYKKMKR 3120
WD40-rpts
Query 3121 QFYKRICDLQISILKKLQKNKFHMEKNISYYIQNNVYIEMTNVDINYTNMNFLDVFNLYNICEKEKNDHFCKRKSKSKRR 3200
WD40-rpts
Query 3201 TNTYMYVPSYFLFSLHKS 3218
WD40-rpts
 1 WD40-repeats found in QUERY=EG_PF14_0123 (Len=3218): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 15 414-461 3.12 243.57 0.03202 7.5% 19.05Multiple sequence alignment of 1 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 414-461 NNKFLTICIFGKQDIRDDNITSEMLKKRKGNKNECYVYSYDENNSYDN WD40 Template TGECLRTLSGHTSGVTSVSF--------SPDGKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |