WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: EG_PF14_0173 [Plasmodium falciparum] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = EG_PF14_0173 (Len=3567) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (EG_PF14_0173, Len=3567): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MEDLESKAIENIHENLKKCIDRKIPKNTNENEEESSKDMFFIYNSLKEYIEQLKHTNNFIQKENDYLRKKNEELLKEFNE 80
WD40-rpts
Query 81 KNLINGNSNKSQKYGTYINEINQLNNENEFIKYKFQNMLRKNISLERSNVELNNQLLNKDNISQYLKSQSRIHNNKYIKD 160
WD40-rpts
Query 161 IRKKQSKSNKSLENIKGYNNVIKMDTTTTTTTTTNNNNNNNNNNNNTDENIRDSIKLSENIKGINNKITNKNIHTYENIN 240
WD40-rpts
Query 241 TYENIHTYENNNECQNIHIKHNNVTNIQSFNFNEKFKSICTCSMLLHDILNILNQNIKYDEPGIFQKSLKNIKIEKDELI 320
WD40-rpts
Query 321 MQNKLLKEKILQIETFILRDPFLVEKLCPIHENINNNFLLKDKNKLYQNNKNISLYRNLCYLENKNFNLRKELFHYKQKI 400
WD40-rpts
Query 401 LFYKTYVNDMRDKLKHNIIQLYNQYHQNKNENTEIMTSVDETFNTNNQQVNTYNQYNNKHISYSKKNICDNNTKNNSLNQ 480
WD40-rpts
Query 481 NYDFIKNQKSFFGLNNSDFNNILKTNNSKNDHNEKIIMQTSTKLNELNVEKKNIEEVKDKYLDPLEKDIPLVDLNIHNKN 560
WD40-rpts
Query 561 DMYYFEIKELIHKRKIELDKKLKGDINVNINTSHHNINSGCNYVKGREEDNSKNKSTLSGVIKNNILENTDNLTYINKSN 640
WD40-rpts
Query 641 NSKPEHINNYNYYINKNIMYTYIKYKYMYDFYVQNKNILKKEMNKEEFNEFVKKYFLLYKKNNKTNQHFNNTSNDILKHY 720
WD40-rpts
Query 721 NQSIPCVNRRNEHSINLNEDKNINQKETNDEDTKNDDINMNVEDYHDITLGDSHQNFIYNIEEENIKQDLPEETCKKEDN 800
WD40-rpts
Query 801 INDYFNEKKNKYQDNIKCTSLKETGKDVHKIQENIMNKKKRKQKEKKKIKEKEKEKEKEKEKVKKKDKDKEKEKEKEKEK 880
WD40-rpts
Query 881 EIYVNKKIYNSFDITNDTYKNTEISKKNDEESISKTKNEYEQYNNNENNKNTEERNHNKKHENFERFYGVEEYPRRHDSS 960
WD40-rpts
Query 961 LEVLKKNIKDLLKKKNKDEKYAFQDDKKDINVSEGKKDGNMQEQKVFANKYNNNKIEDNKEKVDDKLLKEENNIKQNSNI 1040
WD40-rpts
Query 1041 NKNVIESEQVKDSFNIIENVRKYEEYIDDKNDRINTHTIDEKNVISIEEDNNGKQIMKQESRELNDNEKREDNKVNKNLI 1120
WD40-rpts
Query 1121 NNDNINNYSIEENKTNHNDHNDHNGHNDHNGDNCINSFKSYIHNYNSKNEKISTEKSIIINNNDEEKYIEDKINFRNTNF 1200
WD40-rpts
Query 1201 FMKSGSEYSEQDFFNNNKYSKVNIQTFKEIIYYYDINVYQFYMNLILYSKIDLIKMYKNKIFSVQINSADILQYALNTYM 1280
WD40-rpts
Query 1281 NFNNNTSDIEEEFIINKKDGTIKKLNEKEYKTVIEYICNNSNNTCLKTIYHKINFITSESYEEFKNRFVECGGVVNLINL 1360
WD40-rpts (__________
Query 1361 FYDEDLNNFDKIFEVSFVNFCDIIGISRDSCSYHFNCMDKKFKAKGYIFLRNILRYLNVEEEMKEEYHKYNFISMHLKNL 1440
WD40-rpts ___________WD 1____________________)
Query 1441 IYIYITENFHNLNEFFNAVIKQNKLYISLNEFIYFFSANEKMTKYNFAQEDVVNLYYSIIFYVYYTNKNKILQTVNYFHK 1520
WD40-rpts
Query 1521 GKKYEGAYIKNKSHNNDQYVGGQKDNAIINLYMTNQNNKNNNKSINNNNDNKSINNNNDNKRINNNNIHDNNKSIMQDDE 1600
WD40-rpts
Query 1601 YCFVEYDLSLCKEFFTLEDFDFAIEVKDLYFYFEGSECPLSKIKRRIIEIYGSVKKGIFINDQVCNSSDDSMNSDSDINE 1680
WD40-rpts
Query 1681 KDIEENTYEIFKKNKYKHIDKITLYEKKIKNTLENDNSDDIKINKISKKTFMCLMYNIGIQIDYCLTLWGNFEPFLEDHL 1760
WD40-rpts
Query 1761 LDYKMFSAFLNGQIKCSNHENEENIQNIKNKINDIEEDKEISHRLNHNNRLKGTICSNLFMNIEEMNNGNLLTADEIEVT 1840
WD40-rpts
Query 1841 CQILNNISPFYYLDKNERKMFIKQLKKKCYKKNYDLNLLKDHDNTNKNKQNTSNDKNDYFKNEIIILINGILRNNKDGKC 1920
WD40-rpts
Query 1921 FINSVNVIYKYDIYNYIAHTNIAIINIDNSIYTHEFMNLIDKKRNISEEFMSIVNKIPILKNFPNMKKISLSMNVKKSMF 2000
WD40-rpts
Query 2001 EKNKIVIRKHDDPLQFFILKEGKINIFYHTSKTKNNPINTINENQFFGEVSLIFNTLRTCDAIVESNTACCYYISKEYFL 2080
WD40-rpts
Query 2081 SLLNKDIVTEFVEYIRKTYTKGIESIISNYVNNNEDIEQINKYRKVQNSKKNKINKNNNNNNNNDDGNNTVTYDEDKIDE 2160
WD40-rpts
Query 2161 GQNLSSDEKKKTSIIYHKENKNEQDVKKSSSSPLSITNSFNNINKNKKYISNSFNKKNYYTKDFSNKTLNNKLSNTSNNL 2240
WD40-rpts
Query 2241 STDYISLDIEYIDKNNIQSFYSDLDKLLLNIFNAEQKYFTEEIETNLRKIKSFKKILKQMKDKETFLKNIKYEKCPKGKY 2320
WD40-rpts
Query 2321 IILEGDYCEYFYFIKQGQISIQKFNQHKNMYDEFVTYNENQYFGHQLILNNIKAFFIAVAIIDTELYTLEASLFVEFLSP 2400
WD40-rpts
Query 2401 FMDMLNIINDINQIDVLSENVKNDFQKKKQDKNYILKVLKFLKKVNIIQKLDNDTLYNASKNFTLQFFKKGQAIIKYQDK 2480
WD40-rpts
Query 2481 PDFFYIIKKGIVTVKTDFKEDTNQCVTNQKGVEEKINEEENILTDKINKTKSFYLYKYDYFGELSIINEQLRTTRCEAHT 2560
WD40-rpts
Query 2561 NCFLLAIDKISFIKNFSILFNDLLQEADIKYTRSYSLPPWLKSMYGNNFNTNMNSLSIKIPDSASSFSSISEDSSDVFSF 2640
WD40-rpts
Query 2641 EKEINEKLKEEKKKKEKENEKENEKEKEKKKKDKNQNLYDYQTRKDEQKDITGRNIKHINEQKEKSSNDIQIYDTNNFNN 2720
WD40-rpts
Query 2721 SKSIFSEYSMYSIDNEKEMKKIKEEKEQKINEIKMKELKVIEKIKLKEEKKIKSIMKRKVDEINMKSNSNIINSEEAYDN 2800
WD40-rpts
Query 2801 QGDTKNDVIKDKPDTVTNTFATTTYNNNNNNNNNNNNNSNNNNNNNNSNNSYNILSYPNQAEKIEVEKKKKRNSHDEWLN 2880
WD40-rpts
Query 2881 KNNHNVTKENKEVDIYKDNNKDSNSNIIKSEYINIDNEENVENKKEENDKYVIDFPKKSSSILKKKISNSNSSELDINKL 2960
WD40-rpts (____________________________________
Query 2961 LETLIRFINSEYNSIYHFYKGIDKFNTGYVKYNDFLDYMISLNIEDLFGSLENLESVFKHLCNEKNILTLIDLYKNIYKD 3040
WD40-rpts ____WD 2________________________________________)
Query 3041 EEIDKYELNLRLTEVYGSSILAFKNIVFLNVEDALCNYINFEIVCEKVGLSNANIKSIWDEINIMNEEYIPLEIVLSIMN 3120
WD40-rpts
Query 3121 GELFIEEAYIAYNLKKSLLNQVVNFFQVNENLTKMNTDMMETNFEVIYEEPIILNKGHHKIFTNECTHIVKLLESNVYFK 3200
WD40-rpts
Query 3201 FLTLEQRSFFTTLMDRKIMNYGDVLIKQNDDEAPIICIYDGKANLITYNLFGIEAPIGSVENNEVYGCDEAINEIPSNYE 3280
WD40-rpts
Query 3281 VKISSDMATVWILERSVYKENIKPMLEERQKNCTHILPVLRNVPILRYLSEEELVQISYAMKLEMYHPNHTIIKANTYDD 3360
WD40-rpts
Query 3361 KFYIICKGLVTVEKNTEGNKDKIVLSNLKKTDYFGELALIKNIKRTANVILDTEAILLSLSDSEFKRLLHLHFDKFLNRA 3440
WD40-rpts
Query 3441 KANYKRVQMKKKTSIQSEMVNLNSNTNIHSLGSYRSKNKIVTIQDNDDDDKHKYDNTMPKLPKGNISFTLEEKDHNNQKD 3520
WD40-rpts
Query 3521 DGPKVQPDSNKKKKDKEKYRKNKDDDKEKDKNKEKNKKIKNKKKEQT 3567
WD40-rpts
 2 WD40-repeats found in QUERY=EG_PF14_0173 (Len=3567): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 8 1350-1396 3.39 254.63 0.02282 15.0% 23.19 WD 2: Seg 46 2924-3009 3.03 239.79 0.03594 15.0% -2.74Multiple sequence alignment of 2 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1350-1396 ECGGVVNLINLFYDEDLNNFDKIFEVSFVNFCDII-GISRD-------------------------------SCSY----------HF-----N WD 2 2924-3009 KKEENDKYVI--------DFPKKSSSILKKKISNSNSSELDINKLLETLIRFINSEYNSIYHFYKGIDKFNTGYVKYNDFLDYMISLNIEDLFG WD40 Template TGECLRTLSG--------HTSGVTSVSFSPDGKRLVSGSED-------------------------------GTIK----------VW-----D |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |