Input parameters:

  Query = EG_PF14_0243a (Len=605)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PF14_0243a, Len=605):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MIDYYYCYSKNKSDIGKKCLFKKSKSQIIGRIEANEELKKKYIYKENIYYNDDNIKKYSEQYVNIESLKLENKFFYHNEG 80  
WD40-rpts                                                                                      

Query       81 GWTKDVDISEQQNKIKYIKRLDKDINLINSLKILMNETTKILNKNNSINIYEEYFKNDLQNEENFKIKSILVIKDTMRKY 160 
WD40-rpts                                                                                      

Query      161 QRFITSIKWSTDNTYKLAISYCVNDYQKILHNSPKNCLLYNLNQINNPYQTLYSKTFIKCMRFNHKNSDLLLAGSYDGTV 240 
WD40-rpts                                               (___________________WD 1_______________

Query      241 NLWDLRKKNTLCESSSINVSHKNTVHDIIWLQTKTNNHCLSISSDGLSLIWDIRNFAEPIESFYLNKDPSEICELVETAN 320 
WD40-rpts      ___)       (__________________WD 2_________________)                 (__________

Query      321 NELHDLSKISNDINNNNNNNNNNILYNNNTNINTMNKSLHNNTTATKNLYYSPNCLEWNLEAGPSKILIGTDEGYILSLS 400 
WD40-rpts      _______WD 3________________)                                                    

Query      401 KRQAKNLELLQKYGASNEKHLSSITSIKRIPINLKYFLSTDKWGFNIWSEDIKFPIISNYYNECVINKGLWIYDSLFFMI 480 
WD40-rpts                 (________________WD 4________________)   (_________________WD 5______

Query      481 IRKDGYLDFWNLLYNFNQPIIKHKICNCSITEIDSHANNKYVAIGNEMGDIHILKLGDSFCKNSSEEKNALDELFERESK 560 
WD40-rpts      __________)     (_________________WD 6________________)                         

Query      561 REKNLEYIRKQLNCVKKTKEYLNVQDIEILEDVLRETEREYESIA 605 
WD40-rpts                                                   

6 WD40-repeats found in QUERY=EG_PF14_0243a (Len=605):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 11   202-244      4.92  317.70  0.00325       22.5%     45.72
  WD 2:  Seg 15   252-292      5.27  332.48  0.00206       22.5%     46.38
  WD 3:  Seg 20   310-348      3.34  252.57  0.02430        7.5%     25.55
  WD 4:  Seg 26   412-449      6.16  368.96  0.00066       15.0%     40.03
  WD 5:  Seg 29   453-491      5.62  346.90  0.00131       10.0%     54.60
  WD 6:  Seg 33   497-535      5.62  346.74  0.00132       15.0%     55.35

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  202-244    LNQINNPYQTLYSKTFIKCMRF--NHKNSDLLLAGSYDGTVNLWD
   WD 2  252-292    -CESSS--INVSHKNTVHDIIWLQTK-TNNHCLSISSDGLSLIWD
   WD 3  310-348    -SEICE--LVETANNELHDLSK--IS-NDINNNNNNNNNNILYNN
   WD 4  412-449    --KYGA--SNEKHLSSITSIKR--IP-INLKYFLSTDKWGFNIWS
   WD 5  453-491    -KFPII--SNYYNECVINKGLW--IY-DSLFFMIIRKDGYLDFWN
   WD 6  497-535    -NQPII--KHKICNCSITEIDS--HA-NNKYVAIGNEMGDIHILK

   WD40 Template    TGECLR--TLSGHTSGVTSVSF--SP-DGKRLVSGSEDGTIKVWD