Input parameters:

  Query = EG_PF14_0360 (Len=661)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PF14_0360, Len=661):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MIPDNNENNNNLYFLAFSKNKVTIYEYDVDLSKNIVDDINDEIKRCEEEDEKNKINENTVPMTNDEKKVDMNHIRNNNII 80  
WD40-rpts                                                                                      

Query       81 NNNTNNTNQIKKSTNKFNNDFVLNRGIKIYKEYDDVELATCTNDYKKIILVRKSDLNVAEIIDIKSENKNVTCIKTKTQI 160 
WD40-rpts                 (_________________WD 1_________________) (___________________WD 2____

Query      161 KRIITSPRDNYIVLHCQYKPDITNTNLYVYKLNVKSSKKKKKKDKKNSECENIKGEENSVGKENDNYEEEKKNINMNNNN 240 
WD40-rpts      _______________)                                                                

Query      241 VPIHNNNNNSDNNESTNDNIIYNENLIIELTLKSYSNKNWPFFKWSDSESICTCLINNQVYIYKDNNFNTTVNKLKLDNI 320 
WD40-rpts                                                                                      

Query      321 EFFDISPELNNKKGILIATYEQGSKGNPSIFKIFHIDNLNKHIYSKNFFNSDEIKLKWNKNGSSLLLQIHTQVDKEKQSY 400 
WD40-rpts                                                                                      

Query      401 YGSSNLYFIDTVTLKDVNVMTNKGLIYDTIWSNNQNKFYVCKGEIPAEIVLHDKNGNVSHSYGRHKFNTLKLNYNEKLLL 480 
WD40-rpts                  (__________________WD 3_________________)(__________________WD 4____

Query      481 TGGFGNLSGDISIWNTSTKKEITKTKSSCAVICEFFNDGKHFLTATTHPRLRVDNNLKIFKYNGLIVSRINFEELYNVII 560 
WD40-rpts      ______________)(____________________WD 5____________________)                   

Query      561 LPFNKIKFQQTEEPVDINLEHTTLQPYINKQLGIDSKKTGIYRAPRSTGLVNLNGYLSSKLPDREKSSLPPGCNFVNENK 640 
WD40-rpts                                                                                      

Query      641 NYNKKKKKKRSSKSKQKRETF 661 
WD40-rpts                           

5 WD40-repeats found in QUERY=EG_PF14_0360 (Len=661):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    92-131      4.46  298.85  0.00583        7.5%     33.20
  WD 2:  Seg  8   133-176      6.14  368.39  0.00067       15.0%     38.40
  WD 3:  Seg 27   413-453      3.25  248.86  0.02723       10.0%     45.62
  WD 4:  Seg 31   454-495      3.95  277.74  0.01120       17.5%     42.31
  WD 5:  Seg 35   496-541      4.68  308.02  0.00439       20.0%     53.31

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   92-131    KSTN----KFNNDFVLNRGIKIYKEYDDVELA--T---CTN------DYKKIILV
   WD 2  133-176    KSDLNVAEIIDIKSENKNVTCIKTKTQIKRII--T---SPR------DNYIVLHC
   WD 3  413-453    -TLK----DVNVMTNKGLIYDTIWSNNQNKFYVCK---GEI------PAEIVLHD
   WD 4  454-495    -KNG----NVSHSYGRHKFNTLKLNYNEKLLL--TGGFGNL------SGDISIWN
   WD 5  496-541    TSTK----KEITKTKSSCAVICEFFNDGKHFL--T---ATTHPRLRVDNNLKIFK

   WD40 Template    TGEC----LRTLSGHTSGVTSVSFSPDGKRLV--S---GSE------DGTIKVWD