Input parameters:

  Query = EG_PF14_0456 (Len=1275)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PF14_0456, Len=1275):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVKSYDRYEYEDCLGIVNSKSSNCVFLNNNNIISGHDECVGIWNINEKEIKKKLSVPFLPPYYFFTYHVTYICLNDVNKN 80  
WD40-rpts      (___________________WD 1___________________)          (__________________WD 2___

Query       81 IVAVGYTNGSIRLFDMEKNKILSTFSGHTSGICKLKFNENGNYLCSCSKDTNIILWDIINDKGVFKLEGHTNVVTDIEFL 160 
WD40-rpts      ______________)   (_________________WD 3________________)   (___________________

Query      161 QRKNDYLDDFLDNNILISVSKDCLIKVWELNIQTCVQTIVDCEEEITSLIINQTNTRLIVACNSFLKIYKINLYSNHIIK 240 
WD40-rpts      ___WD 4_____________________)   (________________WD 5________________)          

Query      241 DTYNTNSKIYITFLANIKRPTNCRIQNMKMIFFIDNEDIYNYPFELEDEKSDNLLYSNPNNQKVNNLFISSSNGDNIKQN 320 
WD40-rpts                    (_______________________WD 6_______________________)              

Query      321 EEILTTDHLSNPNLLLTNNNNLNTSIKYCERARYSVDGDNSGLLICCTNLKKIEFYKINSIKNQKKSEKNKKKRYIEKLK 400 
WD40-rpts                       (_________________WD 7_________________)                       

Query      401 KKKIKILNEKKKIEKFKGKESIDYNFLNQKLEDLEKELFIYNNYDIHTANDEIKYLFNYNYKFKLQNIDVMKKKKKDNYI 480 
WD40-rpts                                                                                      

Query      481 YLLVSFMSNRLSVYQVNLYDILHNKDNFVVMDNENKEEREDKDNMDRESDMKDHKSGNNIDSDIESGSDNDSDNKSDSNI 560 
WD40-rpts                                             (____________________________________WD 8

Query      561 DSDNESGNNIDSNIDSDNKSGSNIDSGEDDETHNKKKVKIVQKKIYDYSKCFKEISEINKGHNSSVDFLNLSSNNELLVS 640 
WD40-rpts      ____________________________________)               (________________WD 9_______

Query      641 ICKKYVKIWNMNNLQNIITINLEGCTNAIFCNNDESLIISDECGYLYLYELKNIELKYTYKAHANKIINLSKKCNQKNNN 720 
WD40-rpts      _________)(_________________WD10_________________)                           (__

Query      721 NNYNNDNYYYDHNDSSRNNDKGFLSVGEENYLKIFEYTMGVVTNESSDSEKDDNNNNNNNNNDNTYYNNNNEREKKSFIH 800 
WD40-rpts      _______________WD11________________)(______________WD12______________)   (______

Query      801 NKRSNYKKNSSRDELNNDTYNKYYDDSNDVRKIENCEIFMFKEIDCYHLSDKVSCAMYSPDGKYICIGYLNNLIEILYSD 880 
WD40-rpts      ____________WD13__________________)(___________________WD14__________________)  

Query      881 TLKLHLTLYGHSLPITCMDISKDNKILASSGADKFIFLWNMEYGNVNKRIHTECDVVNKIQFFNKNNNLISISRDGYIKM 960 
WD40-rpts       (_________________WD15________________)   (_________________WD16_______________

Query      961 WDAIKFQCICTVDGNFGILKCLVINHNDDFFLTSGTHKSIRIWKKGEDLIFLEEERDKELNLQIEKEAIRNDLAYPSSVE 1040
WD40-rpts      _)   (_________________WD17________________)                                    

Query     1041 KNVLLNKATIKTIETIKSSEKLIEYLDIIEEEIILLDTYYKNLTAYEEAKGKNELPDFVQPPTKPLGRPELLNKDPHEFI 1120
WD40-rpts                                                                                      

Query     1121 IEIMCNIKNNILNEVLISLPFSYAYKLLDYIKTYLISFHFFQKIQDNYKKYLSCGNFNFYVEYSINIVLTIINIYRNQFL 1200
WD40-rpts                                                                                      

Query     1201 FDNKFRFLLYELQQLILPHLKKSVDQCAFNQTTLNFLMYSMDDDELNLDHILQNNSFINKETKKIDQQQGHAKGQ 1275
WD40-rpts                                                                                 

17 WD40-repeats found in QUERY=EG_PF14_0456 (Len=1275):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-44       4.92  317.73  0.00325       15.0%     44.76
  WD 2:  Seg  6    55-95       7.30  416.20  0.00015       22.5%     40.35
  WD 3:  Seg  9    99-137      9.93  524.69  5.3e-06       42.5%     54.55
  WD 4:  Seg 13   141-189      7.52  425.17  0.00012       40.0%     56.92
  WD 5:  Seg 17   193-230      6.31  375.17  0.00055       17.5%     54.02
  WD 6:  Seg 23   255-306      3.49  259.02  0.01994        7.5%     37.23
  WD 7:  Seg 26   338-377      4.47  299.40  0.00573       10.0%     40.05
  WD 8:  Seg 34   520-597      2.98  237.73  0.03826       20.0%      8.13
  WD 9:  Seg 36   613-650      5.70  350.25  0.00118       27.5%     43.02
  WD10:  Seg 39   651-690      7.12  408.58  0.00019       15.0%     47.80
  WD11:  Seg 45   718-756      5.07  323.98  0.00268       12.5%     29.60
  WD12:  Seg 48   757-790      4.22  288.92  0.00793       15.0%     28.32
  WD13:  Seg 51   794-835      4.49  300.02  0.00562        7.5%     42.58
  WD14:  Seg 54   836-878      5.84  355.92  0.00099       20.0%     53.95
  WD15:  Seg 58   882-920      8.78  477.54  2.3e-05       32.5%     55.50
  WD16:  Seg 62   924-962      8.55  467.79  3.1e-05       30.0%     52.75
  WD17:  Seg 66   966-1004     8.03  446.41  6.0e-05       12.5%     55.78

Multiple sequence alignment of 17 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-44     MV------------K--------------------------------------SYDRYEY---EDCLGIVNSKSSNC---VFL----------NNNN-IISGH-DECVGIWN
   WD 2   55-95     SV------------P--------------------------------------F-----L---PPYYFFTYHVTYIC---LND----------VNKNIVAVGYTNGSIRLFD
   WD 3   99-137    -N------------K--------------------------------------I-----L---STFSGHTSGICKLK---FNE----------NGNY-LCSCSKDTNIILWD
   WD 4  141-189    -D------------K--------------------------------------G-----V---FKLEGHTNVVTDIE---FLQRKNDYLDDFLDNNI-LISVSKDCLIKVWE
   WD 5  193-230    -Q------------T--------------------------------------C-----V---QTIVDCEEEITSLI---INQ----------TNTR-LIVAC-NSFLKIYK
   WD 6  255-306    ANIKRPTNCRIQNMK--------------------------------------M-----I---FFIDNEDIYNYPFE---LED----------EKSD-NLLYSNPNNQKVNN
   WD 7  338-377    NN------------N--------------------------------------N-----L---NTSIKYCERARYSV---DGD----------NSGL-LICCTNLKKIEFYK
   WD 8  520-597    ED------------KDNMDRESDMKDHKSGNNIDSDIESGSDNDSDNKSDSNID-----S---DNESGNNIDSNIDS---DNK----------SGSN-IDSGEDDETHNKKK
   WD 9  613-650    -K------------E--------------------------------------I-----S---EINKGHNSSVDFLN---LSS----------NNEL-LVSICKK-YVKIWN
   WD10  651-690    MN------------N--------------------------------------L-----Q---NIITINLEGCTNAI---FCN----------NDES-LIISDECGYLYLYE
   WD11  718-756    -N------------N--------------------------------------N-----N---NYNNDNYYYDHNDS---SRN----------NDKG-FLSVGEENYLKIFE
   WD12  757-790    ----------------------------------------------------------------YTMGVVTNESSDS---EKD----------DNNN-NNNNNNDNTYYNNN
   WD13  794-835    -E------------K--------------------------------------K-----S---FIHNKRSNYKKNSSRDELNN----------DTYN-KYYDDSNDVRKIEN
   WD14  836-878    CE------------I--------------------------------------F-----MFKEIDCYHLSDKVSCAM---YSP----------DGKY-ICIGYLNNLIEILY
   WD15  882-920    -L------------K--------------------------------------L-----H---LTLYGHSLPITCMD---ISK----------DNKI-LASSGADKFIFLWN
   WD16  924-962    -G------------N--------------------------------------V-----N---KRIHTECDVVNKIQ---FFN----------KNNN-LISISRDGYIKMWD
   WD17  966-1004   -F------------Q--------------------------------------C-----I---CTVDGNFGILKCLV---INH----------NDDF-FLTSGTHKSIRIWK

   WD40 Template    TG------------E--------------------------------------C-----L---RTLSGHTSGVTSVS---FSP----------DGKR-LVSGSEDGTIKVWD