Input parameters:

  Query = EG_PF14_0640 (Len=579)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PF14_0640, Len=579):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPSSNDTEKDVLLNEKCKKEIFNTNNDEYSNEISNKSDKKFSYDNQCYIIQEIPFVDYYNYKYEKLNKYDEEKESYFIND 80  
WD40-rpts                                                                                      

Query       81 DNTSSSSSSCSSYKCQENDCNKEINEEINEEINEEIDEEINEEINEEIDEEMNEEINYNKSFNKYIYDKKNYRNKVEGNV 160 
WD40-rpts                       (_________________________________WD 1_________________________

Query      161 NIDIKKCTYKKHIKEKNRNEFLKQCEFNKDGSCYYTISNSNNLNMFATDLSLLNFLQNNEQDEYMKNLDTLYDIYNNMDE 240 
WD40-rpts      _______)      (______________WD 2_____________)                                 

Query      241 IELLKRNNSWLHMKFDEHLYDCKFYPYFEWNDSNSCFFSACSKNKPVSLYSAFDGSELMSFKPMNECNELCNCYSLCFHP 320 
WD40-rpts                      (_______________WD 3______________)   (___________________WD 4__

Query      321 EKNWLLCGTNKSIKVFDFNKPSETLENRILSTRKGKGQKGIISTMEYKNEGYGKNSIYAVGDYNDCLYVYADNCDHKNDY 400 
WD40-rpts      ________________)           (___________________WD 5__________________)(________

Query      401 ILKIENKKNSNGITCVKWYQEFFILSGSRNCSYIYLYDIRNVKDYIQKYERHALTNQQYLFDIYKNYLLCGDTFGYIYIY 480 
WD40-rpts      _____________WD 6____________________)    (_________________WD 7________________

Query      481 NITNNRLINKYFVNRYSPIISINKHPIYPLLLTGSGTRRFYENNDYPIDIITNIINSKNTHIKNLYNISNDEKQENNKKF 560 
WD40-rpts      )(___________________WD 8__________________)                                    

Query      561 PSLSKYINSVCTILMDFPR 579 
WD40-rpts                         

8 WD40-repeats found in QUERY=EG_PF14_0640 (Len=579):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    98-168      3.05  240.71  0.03494       15.0%     10.63
  WD 2:  Seg  6   175-207      6.52  384.16  0.00041       10.0%     46.35
  WD 3:  Seg 12   257-291      5.81  354.52  0.00104        5.0%     32.34
  WD 4:  Seg 16   295-337      5.88  357.66  0.00094       27.5%     53.15
  WD 5:  Seg 20   349-391      5.90  358.42  0.00092       12.5%     47.39
  WD 6:  Seg 24   392-438      7.20  412.08  0.00017       15.0%     56.85
  WD 7:  Seg 28   443-481      7.99  444.61  6.3e-05       15.0%     54.25
  WD 8:  Seg 32   482-524      6.60  387.14  0.00038       15.0%     38.07

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   98-168    -N-------D---CNKEINEEINEEINEEIDEEINEEINEEIDEEMNEEINYNKS-----FNKYIYDKKNY----RNKVEGNVNIDIKKCT
   WD 2  175-207    -----------------------------EK--------------------NRNE-----FLKQCEFNKDG----SCYYTISNSNNLNMFA
   WD 3  257-291    ---------------------------EHLY--------------------DCKF-----YPYFEWNDSNS----CFFSACSKNKPVSLYS
   WD 4  295-337    -G-------S---EL------------MSFK--------------------PMNECNELCNCYSLCFHPEK----NWLLCGT-NKSIKVFD
   WD 5  349-391    -I-------L---ST------------RKGK--------------------GQKG-----IISTMEYKNEGYGKNSIYAVGDYNDCLYVYA
   WD 6  392-438    DNCDHKNDYI---LK------------IENK--------------------KNSN-----GITCVKWYQEF----FILSGSRNCSYIYLYD
   WD 7  443-481    -K-------D---YI------------QKYE--------------------RHAL-----TNQQYLFDIYK----NYLLCGDTFGYIYIYN
   WD 8  482-524    IT-------NNRLIN------------KYFV--------------------NRYS-----PIISINKHPIY----PLLLTGSGTRRFYENN

   WD40 Template    TG-------E---CL------------RTLS--------------------GHTS-----GVTSVSFSPDG----KRLVSGSEDGTIKVWD