Input parameters:

  Query = EG_PFA0520c (Len=446)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFA0520c, Len=446):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSPKESKKRKSNALDEACLELSEEVENDVSHEKIDEDEEEDVETQFNNWKTNSGLLYDFVCRKELEWPSLSVDFGDFHH 80  
WD40-rpts                                                                                      

Query       81 ENLENNVLNQIVCVGTHTSNKEPNFLYVCDVLFPLEQVPQEKCIYKSNENYEGFDFCSEKKKFTIKSKIAHTGEVNRIKF 160 
WD40-rpts                                                                          (___________

Query      161 VPLEKKNFVVTKAVDGNVHLFDINKHKIETVDDKMNPEVSFVGNQSDGFGLDFQPIKKYILTCANDGLINVYDYNTLNTK 240 
WD40-rpts      ___WD 1______________)(_______________________WD 2______________________)       

Query      241 TVQPFYKVQYKSPVNDISPTNDPNLILACADNGYILIFDFRIKSNEPAQQTLGQQVPVNTVALNTFTGLFASGSDNGKIK 320 
WD40-rpts        (________________WD 3_______________)     (_________________WD 4______________

Query      321 VWDLKKFHEPQHIINAHKEAIIRLNFSPNDASILASASNNRFINVYDLNKIGEELDAIDLSDGPSELIFSHGGHTQPVTD 400 
WD40-rpts      __)    (_________________WD 5_________________)                 (_______________

Query      401 FNWNHHKKLKMFIGSTSEDNTLQFWQLKSELLDETNTIPTSNTDVE 446 
WD40-rpts      ___WD 6__________________)                    

6 WD40-repeats found in QUERY=EG_PFA0520c (Len=446):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   149-182      4.89  316.57  0.00337       25.0%     43.09
  WD 2:  Seg  8   183-233      7.37  419.13  0.00014       25.0%     55.06
  WD 3:  Seg 13   243-279      7.24  413.67  0.00017       17.5%     46.11
  WD 4:  Seg 16   285-323      8.76  476.52  2.4e-05       32.5%     52.60
  WD 5:  Seg 19   328-367      7.11  408.40  0.00019       30.0%     50.75
  WD 6:  Seg 23   385-426      6.09  366.33  0.00072       32.5%     51.29

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  149-182    -------------------IAHTGEVNRIKFVP-LEKK-NFVVTKAVDGNVHLFD
   WD 2  183-233    INKHKIETVDDKMNPEVSFVGNQSDGFGLDFQP-IKKY---ILTCANDGLINVYD
   WD 3  243-279    --------------QPFYKVQYKSPVNDISPTN-DPNL---ILACADNGYILIFD
   WD 4  285-323    -N-----------EPAQQTLGQQVPVNTVALNT-FTGL---FASGSDNGKIKVWD
   WD 5  328-367    -H-----------EPQHIINAHKEAIIRLNFSPNDASI---LASASNNRFINVYD
   WD 6  385-426    -S-----------ELIFSHGGHTQPVTDFNWNH-HKKLKMFIGSTSEDNTLQFWQ

   WD40 Template    TG-----------ECLRTLSGHTSGVTSVSFSP-DGKR---LVSGSEDGTIKVWD