Input parameters:

  Query = EG_PFC0100c (Len=600)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFC0100c, Len=600):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKDVCVTTDLNNKFIKDEEKENVLLKRSLLLSKNMYLGNDILTPYNYNLLAYDQNINKRITILDEDNDDDNVINKELKEI 80  
WD40-rpts                                                                                      

Query       81 STLALSDGNNRKTHEELYKENELKNRRRNIRENVLKKLTCIKMNINMRELDEYSCVKKLYIKKCENNDIQKENDINKKNK 160 
WD40-rpts                                                                                      

Query      161 KKHKKKKKQSIISSIINDDETYRNDNNYNNYYNIIDNLNYNIHEEKNNNNNNNVNTENSLLPYTNDGKINNTNNLNNFGP 240 
WD40-rpts                                                                     (________________

Query      241 IIKKSDDNILSSDVLKHIKTLDIHKKIKKPKWHFPYKLYRVILGHSGWVNCVDVDISNEWFATGSNDRLIKIWDLASCKL 320 
WD40-rpts      _WD 1________________)             (_________________WD 2________________)   (__

Query      321 KLTLTGHINSIRDIKISKKNPYLFSCGEDNRVKCWDLEYNKVIRDYHGHLSGVYCLSLHPSLDLLMSGGRDAVVRVWDIR 400 
WD40-rpts      _______________WD 3________________)   (_________________WD 4________________)  

Query      401 TKSSVFVLSGHTGTVMSICSQSVEPQVVSGSQDKMIRLWDLNNGKCRISLTHHKKSIRSLSIHPFEYSFCSCGTDNVKVW 480 
WD40-rpts       (_________________WD 5________________)   (________________WD 6________________

Query      481 CGADAEFDRNITGFNSIINCSLIKQDPYFNDSSILILGSNNGQLHFYDWSSGYKYDTLSNKVVPGTVECENSTLSMAFDK 560 
WD40-rpts      )   (___________________WD 7___________________)          (_________________WD 8

Query      561 SESRLITTHGDKSIKIWKENEDATPENFPIKWNPYENFKF 600 
WD40-rpts      _________________)                      

8 WD40-repeats found in QUERY=EG_PFC0100c (Len=600):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   224-262      3.48  258.47  0.02028       10.0%     34.07
  WD 2:  Seg  4   276-314      8.81  478.61  2.2e-05       30.0%     50.78
  WD 3:  Seg  8   318-356      9.72  516.32  6.8e-06       30.0%     55.90
  WD 4:  Seg 12   360-398     10.14  533.44  4.0e-06       37.5%     56.32
  WD 5:  Seg 16   402-440      9.92  524.33  5.3e-06       37.5%     52.29
  WD 6:  Seg 20   444-481      8.05  447.26  5.8e-05       30.0%     51.28
  WD 7:  Seg 24   485-528      7.57  427.41  0.00011       25.0%     52.31
  WD 8:  Seg 29   539-578      9.12  491.49  1.5e-05       20.0%     41.35

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  224-262    -TNDGKINNTNNLNNFGPI-----IKKSDDNILSSDVLKHIKTLD
   WD 2  276-314    -YKLYRVILGHSGWVNCVD-----VDISNEWFATGSNDRLIKIWD
   WD 3  318-356    -CKLKLTLTGHINSIRDIK-----ISKKNPYLFSCGEDNRVKCWD
   WD 4  360-398    -NKVIRDYHGHLSGVYCLS-----LHPSLDLLMSGGRDAVVRVWD
   WD 5  402-440    -KSSVFVLSGHTGTVMSIC-----SQSVEPQVVSGSQDKMIRLWD
   WD 6  444-481    -GKCRISLTHHKKSIRSLS-----IHPFEYSFCSCGTD-NVKVWC
   WD 7  485-528    -AEFDRNITGFNSIINCSLIKQDPYFNDSSILILGSNNGQLHFYD
   WD 8  539-578    SNKVVPGTVECENSTLSMA-----FDKSESRLITTHGDKSIKIWK

   WD40 Template    TGECLRTLSGHTSGVTSVS-----FSPDGKRLVSGSEDGTIKVWD