Input parameters:

  Query = EG_PFC0365w (Len=532)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFC0365w, Len=532):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSIICTISGQTPEEPVISKTGYIFEKRLIEKHIINYGICPVSGEVLTLEDLYPIKNEKIVKPRPITASSIPGLLSIFQTE 80  
WD40-rpts                                                                                      

Query       81 WDSIISEMFSLRTHVNDIRNELSHSLYQYDAATRVIAKLLKEKNGYKEEIENLKKQIFQLKSSNDLDIYEIGLNEELLEK 160 
WD40-rpts                                                                                      

Query      161 MQNVAKDLLINRKKRKIDNVCSVEQWKDFKNTNEFNIHSSTIPGVTCITLDVNKYKYNYNDDHMKHNFFSGGNDGNVYYV 240 
WD40-rpts                                                       (_____________WD 1_____________

Query      241 SLNDNKILSKLQGHLKKVNSIISHPSNFICITASNDKTIRIWKGDDNNVHHNDNGDSDSDNNNNNNDNDGSHLNNNEYIY 320 
WD40-rpts      )   (_________________WD 2________________)   (_______________WD 3______________

Query      321 DNYQFVSAHVITKHKDHVTSLALHPLENYFISSSKDSMWILHDLETAKTIKTSKDNPSSFKHLAIHPDGMMFGIAAQDSN 400 
WD40-rpts      )   (_________________WD 4________________)   (_________________WD 5____________

Query      401 IHIYDIKSQEYKATLNGHTKSLNCLSFSENGYYLASSSKDNTVKLWDLRKAQSFQTITLNETPNFISFDYSGKYLSIAVE 480 
WD40-rpts      ____)   (_________________WD 6________________)   (________________WD 7_________

Query      481 NDIQIYNFETKNQANLIKTLSSHTDIVTQTCFGSTTSYILSSSMDKTIKLWN 532 
WD40-rpts      ______)      (_________________WD 8________________)

8 WD40-repeats found in QUERY=EG_PFC0365w (Len=532):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   210-241      4.41  296.76  0.00622       10.0%     40.19
  WD 2:  Seg  7   245-283      9.32  499.63  1.1e-05       30.0%     57.15
  WD 3:  Seg 11   287-321      4.96  319.36  0.00309        5.0%     14.64
  WD 4:  Seg 13   325-363      8.54  467.39  3.1e-05       22.5%     56.28
  WD 5:  Seg 17   367-405      8.78  477.26  2.3e-05       20.0%     58.01
  WD 6:  Seg 20   409-447      9.80  519.45  6.2e-06       45.0%     50.57
  WD 7:  Seg 24   451-487      5.13  326.69  0.00246       17.5%     50.78
  WD 8:  Seg 28   494-532      9.35  501.08  1.1e-05       37.5%     49.94

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  210-241    -------LDVNKYKYNYNDDHMKHNFFSGGNDGNVYYVS
   WD 2  245-283    NKILSKLQGHLKKVNSIISHPSNFICITASNDKTIRIWK
   WD 3  287-321    NNVHHNDNGDSDSDNNNNNNDN----DGSHLNNNEYIYD
   WD 4  325-363    FVSAHVITKHKDHVTSLALHPLENYFISSSKDSMWILHD
   WD 5  367-405    AKTIKTSKDNPSSFKHLAIHPDGMMFGIAAQDSNIHIYD
   WD 6  409-447    QEYKATLNGHTKSLNCLSFSENGYYLASSSKDNTVKLWD
   WD 7  451-487    AQSFQTITLNET-PNFISFDYSGKYLSIAV-ENDIQIYN
   WD 8  494-532    ANLIKTLSSHTDIVTQTCFGSTTSYILSSSMDKTIKLWN

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD