Input parameters:

  Query = EG_PFE0505w (Len=747)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFE0505w, Len=747):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSKNDEYKNEKGEGEELPSSDGESSDGSFGPVPLQQNKDNINDENYNDENYNDENYNDKNYNDNDYISGNEKDVVLLDSK 80  
WD40-rpts                                                                                      

Query       81 KKKKNSVSCSSSSSINIPENEELLNKKKRKVKGIIEENKKNQEKMKKKKIRINNDIYLKNLPTNKNYQVSYMHTDIVTHV 160 
WD40-rpts                                                                     (________________

Query      161 VVSNKKKYIITASLNGIIKFWYKNIGCIEFVKHFKIHSDEIINIFISEDEEHLGSLSKDKTYKQFDITSFDMNIVIKLSF 240 
WD40-rpts      _WD 1________________)     (_________________WD 2________________) (____________

Query      241 IPRTGEFIYSSIFSTEVKVAISSSEKACIYIYKPLESDICIQTIDFGCCNIIEIIKYNKFYDLCVFSDNEGLLDIVDVTN 320 
WD40-rpts      ________WD 3____________________)                                               

Query      321 FKFPTSKEEKKSKTNNNMDHKLIDFMNKRYPIKKINFSFKSETDLYELCKYKTYALCISLSLDGEYMAILSENYFLRIYK 400 
WD40-rpts                                      (_____________________WD 4_____________________)

Query      401 FESMKLYRVYDESTEMYLTAQNDPLKKELHIDSFDFGKRLFIEKEIKKYMKNQNINFNMISFDESNQYIIYSTFIGIKVV 480 
WD40-rpts                                                                                      

Query      481 NFITNQLCYIIGKNEANLRYLSISIYQNIIPINKVRTNIHESLYINEKNISDCALFCTVYKKARFYVFSKKKLNEHELDD 560 
WD40-rpts                                                                                      

Query      561 RDIYNEQPTKNDVNSLISNPLKNIETIHKNTPKSAIIYTTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKH 640 
WD40-rpts                                                                                      

Query      641 FMVQTGDPSGDGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIV 720 
WD40-rpts                                                                                      

Query      721 LDIEKVRTDKRDKPLEDIKILNIKINN 747 
WD40-rpts                                 

4 WD40-repeats found in QUERY=EG_PFE0505w (Len=747):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   144-182      4.85  315.17  0.00352       30.0%     40.40
  WD 2:  Seg  4   188-226      5.80  354.34  0.00104       27.5%     51.02
  WD 3:  Seg  8   228-273      2.82  231.18  0.04668       25.0%      2.32
  WD 4:  Seg 16   353-400      2.86  232.81  0.04443       17.5%     51.37

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  144-182    -NK------NYQVSYMHTD---------IVTHVVVSNKKKYIITASLNGIIKFWY
   WD 2  188-226    -IE------FVKHFKIHSD---------EIINIFISEDEEHLGSLSKDKTYKQFD
   WD 3  228-273    TSFDMNIVIKLSFIPRTGE---------FIYSSIFSTEVKVAISSSEKACIYIYK
   WD 4  353-400    -KK------INFSFKSETDLYELCKYKTYALCISLSLDGEYMAILSENYFLRIYK

   WD40 Template    TGE------CLRTLSGHTS---------GVTSVSFSPDGKRLVSGSEDGTIKVWD