Input parameters:

  Query = EG_PFE0540w (Len=526)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFE0540w, Len=526):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MALSFIYNFMVEHEFIETLEVFEKEYVKKFQDDINNLRKIEYENLFTQNELLRNDFLNHEKLTKEVQSSLEDANKKIQKI 80  
WD40-rpts                                                                                      

Query       81 IKERDYYIMHHKRVLQEKETLNKEIHKQKHEIEKIQNSVDEIKMKYESAIKEKMLVLLEKEKKDAKIEGLNKYIERLKDI 160 
WD40-rpts                                                                                      

Query      161 LGSSKLDDSTLDISSINAKESESSHNILKNDKNNLGKDNIKREDTPWPNNENADCAFTEENNERDNIYNLSITSLNIEKS 240 
WD40-rpts                                      (_________________WD 1________________)   (_____

Query      241 FNAHNNAVLGLAYNDEVHLLATGGDDGLWKTWSSMNYELVMASQGHKKWIGDICFNNKGNILCTCSGDSKIKMWDLVKEK 320 
WD40-rpts      ____________WD 2________________)   (_________________WD 3________________)   (_

Query      321 CVHTFKNSTGPIWSLSFHHQGDFFASASMDQTIRIFDINSLRQRQILRGHVDSVNSVNFHPYFRTLVSASVDKTISIWDM 400 
WD40-rpts      ________________WD 4________________)   (_________________WD 5________________) 

Query      401 RSGLCENTFYGHHFPCNYSNFNKDANWIISCDSGGVVKIWDIRTNKCFINIDAGPACANKCPMDKNNKYLFIASEDHTIK 480 
WD40-rpts        (_________________WD 6________________)   (_________________WD 7______________

Query      481 IFNVVEKKFIRVLKHEFPIKNVILANNKIICSLSSGNIYIWGEKTN 526 
WD40-rpts      __)(_________________WD 8________________)    

8 WD40-repeats found in QUERY=EG_PFE0540w (Len=526):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   193-231      4.09  283.69  0.00932        7.5%     18.05
  WD 2:  Seg  3   235-273      8.97  485.27  1.8e-05       20.0%     45.89
  WD 3:  Seg  6   277-315      9.70  515.27  7.1e-06       30.0%     56.27
  WD 4:  Seg 10   319-357      9.74  517.01  6.7e-06       32.5%     52.34
  WD 5:  Seg 14   361-399     10.10  531.68  4.2e-06       42.5%     52.35
  WD 6:  Seg 18   403-441      9.65  513.08  7.6e-06       30.0%     54.50
  WD 7:  Seg 22   445-483      8.90  482.45  2.0e-05       22.5%     57.11
  WD 8:  Seg 26   484-522      5.83  355.69  0.00100       15.0%     51.54

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  193-231    -NN-LGKDNIKREDTPWPNNENADCAFTEENNERDNIYNLS
   WD 2  235-273    -LN-IEKSFNAHNNAVLGLAYNDEVHLLATGGDDGLWKTWS
   WD 3  277-315    -YE-LVMASQGHKKWIGDICFNNKGNILCTCSGDSKIKMWD
   WD 4  319-357    -EK-CVHTFKNSTGPIWSLSFHHQGDFFASASMDQTIRIFD
   WD 5  361-399    -LR-QRQILRGHVDSVNSVNFHPYFRTLVSASVDKTISIWD
   WD 6  403-441    -GL-CENTFYGHHFPCNYSNFNKDANWIISCDSGGVVKIWD
   WD 7  445-483    -NK-CFINIDAGPACANKCPMDKNNKYLFIASEDHTIKIFN
   WD 8  484-522    VVEKKFIRVLKHEFPIKNVILANNK--IICSLSSGNIYIWG

   WD40 Template    TGE-CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD