Input parameters:

  Query = EG_PFE0885w (Len=716)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFE0885w, Len=716):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVRVSDNELSDKELVDFLSEDSDNGDENLLNKKYSDKEALITLEVDFPKIVTILGIPKVESEKHGRLAEVLKKLFIRHLS 80  
WD40-rpts                                                                                      

Query       81 AKISDSSLLNMKIHMPTDEENKTKGICFVTFNDSFQANEAVKILNKLKLDAKHILTTSKMDDIENIINRDEKAMPINVVG 160 
WD40-rpts                                                                                      

Query      161 FTREKIRWWLYDEKCREQFIVRYDSHFEVHWFDPLEKEPQLIYTTFKKNAPFSSVQWSNQGSYLVSFHNPGIALWGGDSF 240 
WD40-rpts                                            (________________WD 1________________)(___

Query      241 EKLIRLQHKSVKEIMFSPNENYVLTWDGTPYSLRNEKSICIWRVITGKLLRSFITPEYSPKEKMFPHFLWSPDDKYIACI 320 
WD40-rpts      __________________WD 2____________________)   (___________________WD 3__________

Query      321 GKQKEVYVYELPSMLLIEDQEKKRTPLKYSGVKEFDWSPVDNILAIWIPQTNDTPGTLILVDVPSRKELVSRKIYDVSVA 400 
WD40-rpts      _________)                                                       (______________

Query      401 SIHWHNKGDYLCLKTTIQKKSGKKIKKEYTQLEIFRMREKNIPVDNVQIEAVKTKQFHWEESNSNRFALILREETTNKQQ 480 
WD40-rpts      ___WD 4________________)                                                        

Query      481 IRFYKISNKGTARDAKWSSTFDINNQMNFMKWSPQGTYFILASLASEGTLYFCCLNNNDEVDVIHKDEHLLVNSISWSRC 560 
WD40-rpts             (_____________________WD 5____________________)    (_________________WD 6

Query      561 GRFLVSAVSNNPNAFNTGYREENSEAGFHIWTFQGKCLMRIKKPSFIQFLFRPHPKSLFNDKLKLDIKNNLNNYSKKFDN 640 
WD40-rpts      ________________)                                                               

Query      641 IDEKMKTAKKNALLTERKNVENSFNQKFQEITALFQSYQEYEQLKKNWETFENQFEWEEKTIVIEHVLSVKEEIFA 716 
WD40-rpts                                                                                  

6 WD40-repeats found in QUERY=EG_PFE0885w (Len=716):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  8   199-236      4.34  293.90  0.00680       27.5%     51.96
  WD 2:  Seg 12   237-283      5.07  323.99  0.00268       15.0%     51.81
  WD 3:  Seg 16   287-330      4.47  299.49  0.00572       20.0%     44.35
  WD 4:  Seg 25   386-424      3.62  264.23  0.01699       12.5%     34.75
  WD 5:  Seg 33   488-534      3.99  279.44  0.01063       20.0%     41.06
  WD 6:  Seg 37   539-577      5.04  322.72  0.00278       22.5%     40.74

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  199-236    -PQLIYTTF-----KKNAPFSS-----VQWSNQGSY--LVSFH-------NPG-IALWG
   WD 2  237-283    GDSFEKLIR-----LQHKSVKE-----IMFSPNENY--VLTWDGTPYSLRNEKSICIWR
   WD 3  287-330    -GKLLRSFI-----TPEYSPKEKMFPHFLWSPDDKY--IACIG-------KQKEVYVYE
   WD 4  386-424    -RKELVSRK-----IYDVSVAS-----IHWHNKGDY--LCLKT-------TIQKKSGKK
   WD 5  488-534    NKGTARDAKWSSTFDINNQMNF-----MKWSPQGTYFILASLA-------SEGTLYFCC
   WD 6  539-577    -DEVDVIHK-----DEHLLVNS-----ISWSRCGRF--LVSAV-------SNNPNAFNT

   WD40 Template    TGECLRTLS-----GHTSGVTS-----VSFSPDGKR--LVSGS-------EDGTIKVWD