Input parameters:

  Query = EG_PFE0930w (Len=1276)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFE0930w, Len=1276):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNYTNTIRREKRKRQEEINNVIQKKIKNCNMLKYYQNTKQNDYDFSSLMTKNIGINKSQQIFIKNVHNDENLCTYENDSV 80  
WD40-rpts                                                                                      

Query       81 QKATHHLIKNEYNDTKFLLYDEMCVNQKGNKNVQFLVHLKKYKEECSYPHFIRKGLKRKNEKDMKMIDDEKYDKKNICNK 160 
WD40-rpts                                                                                      

Query      161 NIYIERPCEQNAHIKEKNEQDVSTCNDMNRLKGYKKKLGHPKKKKTNHKGNNNNDGDNNGGHHNGGDNNNGDNNNGDNNN 240 
WD40-rpts                                                                                      

Query      241 GDNNNGDNNNGDNNNNYYYNNLCNNNCEDNKAHSHMWEGLLKKDVLLLLIQAIKNMGYKKSAKYLELESGIELEQPLIKK 320 
WD40-rpts                                                                                      

Query      321 MHKNILLGKWKNAIISLKKLNINKKLIKAISFLIYEQCFIEYLYEGKYFAALRCLRNKLEKCCFDQDTYYRLHQCTTFFM 400 
WD40-rpts                                                                                      

Query      401 IINNNNENYDNCQNNDNCQNNDNCQNNDNYNNNFYYNIQYTCKEKYKNSRSILFEKINRLLPEHIIIPPRRLAILLHQSL 480 
WD40-rpts                                                                                      

Query      481 KYQVDNCLFHNHFSQKTLKSKRTMKCTRMDNSKLYKRDNEKRNKCNKSECKRKQSHMTKNIKKKKKDMKVDDNIFRKEKR 560 
WD40-rpts                                                                                      

Query      561 KNKNNKNKMNDPIKIRCPTNLSSNNEPTNNNNITSVTTKCLSNEDTLNVSNKENTTFMNTSMWNNENVQQNGEQYVQQNG 640 
WD40-rpts                                                                                      

Query      641 EQYVQQNGEQYVQQNVQQNVQQNEYNITNINLSYDNSKKKCFMTYPPRAEKTVVPHKCNKEEEYQEDVYNANTSNPTSLD 720 
WD40-rpts                                                                                      

Query      721 IYNNSTTYENQRKKKRNIIIKQECNEEMSSNNDQNYVIQKQNNDIIIKEGTIENILKTYEDVIITNKNIEHNNNHTDKGN 800 
WD40-rpts                                             (______________________WD 1______________

Query      801 NEDINNLKNVENNLVSNNNNNMELLNYKNKCCISNEIELQQNNVDNEKMKQMKVNYNVKDKNKYMNKKQTNKLNNNNNNN 880 
WD40-rpts      ________)                         (________________________WD 2_________________

Query      881 NNINIFKTCNHDNQDEMYQSRNHFDCKEYPTKIPCCYKHNELHSLSLLKNHECKKIKLPYYCIKILQGHKDEVWYVNVSP 960 
WD40-rpts      ______)   (_________________WD 3________________)          (_________________WD 

Query      961 NGKYIASSSKDKSIFLWKGIYPFNKMREWNGHIDGVSYIIWSHNSKYLVSGSNDSNIIIWSPKSNKRKLSLNMHSGPITS 1040
WD40-rpts      4________________)    (_________________WD 5________________)   (_______________

Query     1041 ICWSKDDSIIVSSAFDKKIFCTKLNEELKSFSILYAWSFSTRIQNFVFTNNDQYLIVVASDKNVRVIDYNQKKELYILPE 1120
WD40-rpts      __WD 6________________)(____________________WD 7___________________)(___________

Query     1121 FDTITSVCASKLYNHILVNIADQKPTIKLWDVKYRYIIQTYRGHKQGRFIVHSTFGGKNEDYVISGSEDSLIYIWHKTKG 1200
WD40-rpts      ________WD 8__________________)   (__________________WD 9__________________)   (

Query     1201 YLLDVINGHASTVSIAIWPLSYSKFPYMISASDDHTLMIWNVHPKINKIKKEKKKTKKKFIHPFLRELTKYHSIKN 1276
WD40-rpts      __________________WD10__________________)                                   

10 WD40-repeats found in QUERY=EG_PFE0930w (Len=1276):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 12   760-809      2.95  236.44  0.03979        5.0%      9.41
  WD 2:  Seg 16   835-887      3.92  276.48  0.01164        7.5%     38.95
  WD 3:  Seg 20   891-929      5.11  325.55  0.00255        2.5%     38.32
  WD 4:  Seg 23   940-978      9.09  490.20  1.5e-05       37.5%     50.01
  WD 5:  Seg 27   983-1021     9.35  500.96  1.1e-05       37.5%     55.30
  WD 6:  Seg 31  1025-1063     8.05  447.33  5.8e-05       25.0%     54.99
  WD 7:  Seg 35  1064-1108     6.81  396.16  0.00029       20.0%     55.16
  WD 8:  Seg 39  1109-1151     5.15  327.59  0.00239       25.0%     53.34
  WD 9:  Seg 43  1155-1196     7.49  424.05  0.00012       32.5%     55.51
  WD10:  Seg 47  1200-1241     7.30  416.15  0.00015       27.5%     53.45

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  760-809    KQNNDI-IIK-------------EGTIENILKTYEDVI---ITNKNIE---HNNNHTDKGNNE--DINNLKN
   WD 2  835-887    NEIELQ-QNNVDNEKMKQMKVNYNV----------KDK---NKYMNKK---QTNKLNNNNNNN--NNINIFK
   WD 3  891-929    -HDNQD-EMY-------------QS----------RNH---FDCKEYP---TKIPCCYKHNEL--HSLSLLK
   WD 4  940-978    -YYCIK-ILQ-------------GH----------KDE---VWYVNVS---PNGKYIASSSKD--KSIFLWK
   WD 5  983-1021   -FNKMR-EWN-------------GH----------IDG---VSYIIWS---HNSKYLVSGSND--SNIIIWS
   WD 6 1025-1063   -NKRKL-SLN-------------MH----------SGP---ITSICWS---KDDSIIVSSAFD--KKIFCTK
   WD 7 1064-1108   LNEELK-SFS--------ILYAWSF----------STR---IQNFVFT---NNDQYLIVVASD--KNVRVID
   WD 8 1109-1151   YNQKKELYIL-------------PE----------FDT---ITSVCAS---KLYNHILVNIADQKPTIKLWD
   WD 9 1155-1196   -RYIIQ-TYR-------------GH----------KQGRFIVHSTFGG---KNEDYVISGSED--SLIYIWH
   WD10 1200-1241   -GYLLD-VIN-------------GH----------AST---VSIAIWPLSYSKFPYMISASDD--HTLMIWN

   WD40 Template    TGECLR-TLS-------------GH----------TSG---VTSVSFS---PDGKRLVSGSED--GTIKVWD