Input parameters:

  Query = EG_PFE1270c (Len=1869)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFE1270c, Len=1869):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLSIYKRICCNNALRSICIINKFVICVSFGNIIKIINVRNINILADFVVSSSSHIYGFCYKKENNKKYGILIAHGVHKIY 80  
WD40-rpts                                                                                      

Query       81 IYKLYINLTNEKCLLKLLKKYCTNKWILKTTFFLKKEDDMLFSNPMSSTYERHKNEKTHNIDKINNIENKDLQKIKNILI 160 
WD40-rpts                                                                                      

Query      161 ISLSNGSILLLDIYKGISSLKYKFIGIHLLYSSDIFIKHQKKCYNIYVVGGTPFNKILLWSFKINKKDITKYWCAQTNKN 240 
WD40-rpts                                                                                      

Query      241 NNINNNKIIIPIKHFEELCGHRGIIFKVKFFKSTKYICSVSDDREGRVWYRMKNEEYIKKTNKRILEKKKNTYQMNEPSL 320 
WD40-rpts                                                                                      

Query      321 YYYTCIKILTGHNARVWDIDMGKFKNKLFFFTCSEDSMCNVYSKNQNKFFKYSNNSSSTIRCILYHHYMQLIISGSDNGT 400 
WD40-rpts        (__________________WD 1_________________)   (_________________WD 2____________

Query      401 LHIKPITSFFLETHKDLDQVKKKKYKHNNNNNNDDDNNNDDDNNNDDDNNNDDDNNNDDDNYNNYDNNNDDDNYNNYDNC 480 
WD40-rpts      ____)                                                                           

Query      481 GEDHISHQLCNNHIIIEDKKNDKNRLLYNSGTSINMYEKNVIKKKTCIDSINNGVQKNDTINFYVDELCKIMKKKNDWIR 560 
WD40-rpts                                                                                      

Query      561 SVDHVNLYDVIVCTNFGRIYILKTKEKNKKLYLIYEEERENYLLTCLTFFGTQCICLGYSNGYCCFVILKEEYDNYTNCK 640 
WD40-rpts                                                                                      

Query      641 NENNIKYNKEIENINKKQDIIFYESQFISDEKKNLQSTYFSCFNHRISEMLLVPLSCINYYNIIDSLSTNKMIKKNIDHV 720 
WD40-rpts                                                                                      

Query      721 LYLRMRQSKQNKEENVTKKNKKNNNNNNNNNKNNNSYSSRCSSRCSSRCSSSRCSSSSFCSSSSFCSSLCTNQMLLQNME 800 
WD40-rpts                                                                                      

Query      801 RDLDYSSYFYQIIYNHNIPNLNHISCKLLEKKEKSYSCTPTLPALSFDLSINTFLLFNFDHTGNIKIFNIEVYKNEKVEI 880 
WD40-rpts                                                                                      

Query      881 QKMCDTMIDVKNKKSKIICVNYVLRQKRIKIEKKKKNLKEIKNVYMDEVQHKIGILLFVGDEYGCIFILYINIPIQIDEN 960 
WD40-rpts                                                                                      

Query      961 NKIIYHFNKAYIKSKEKLRVHNNRKVFDIKIIDQCIYSCGQNGNILKYELYKDERKIYSLYKLCLIKIPYYSSLYKILPT 1040
WD40-rpts                                                                                      

Query     1041 MYDIPSDVHHTKVYSNSLTKKEDHNNRHNINNNNDNNNDNNDDNNNDNNNNDNNNDNNNDNNNDNNNDNNNDNNNDNNND 1120
WD40-rpts                                                                                      

Query     1121 NNNDNNNDNNNDNNNDNNNFYYYYNEAYHKFSTLTKEDKKKMNNIHDNIFICCFKEKKFVLYDMKKKTEYLSVECGGFRR 1200
WD40-rpts                                                                                      

Query     1201 PLSVFMKSLSNSSLSFSLCFCKEKNIYFSFKNINNKTNNIIPYEQIYYNSDFHAKNVSFLLWFDENYFCTCSEDGTIKLM 1280
WD40-rpts                                                      (______________WD 3_____________

Query     1281 YINKKKNIRNREHIQKTKQNKNVKVNNMKDIKNDIFNNNNYNIYDKKKKINYLKYELRIIQNIYNHTEPIFYMSFLKSPF 1360
WD40-rpts      )                                                                               

Query     1361 YFSRKFKLFISVGAKNSANIFYAFVHNENSNGSGTYKEYTNNCPNNNNKNNNNKNNKNNILGNTIMLNNIDNSKKNAPII 1440
WD40-rpts                                                                                      

Query     1441 YHLEKLRTHQFSSDLRYLCVHGFFNIISKVEYTYVIQTNIFIGTSIGYIFHYTGLYEFTIYNKIIFSKIIKRATIISTYN 1520
WD40-rpts                                                                                      

Query     1521 LNSTILSLSWKQICINRNYDNIDGKNIYDINNTNDNNIYDKNYTNDNNIYDKNNTNDNNIYDKNNTNDNNIYDKNNTNDN 1600
WD40-rpts                                                                                      

Query     1601 NIYDKNNTNDNNIYDKNNTNDNNIYDKNNTNDNNIYDKNNIMSLKNYDMPPKEQYITNDNIFITKDQYKTNFTKYELVNI 1680
WD40-rpts                                                                                      

Query     1681 LFCGLNNGMIIIYQLDKKLKLLKKIHIHQNGINKICVKKKQKDYLQIYTCSDDQSINILIFKMIYIQNNKLKKLIIIQNT 1760
WD40-rpts           (_________________________WD 4________________________)                    

Query     1761 KCTHAHLSSIRSLYMFSNYLLSVSWDQYIHIWKIQKNEKKIYFLNKIRQIKTSVYDVSCINSFELMVVWKYSISNLFHKK 1840
WD40-rpts                                                                                      

Query     1841 YIAKKLCFIKSYEYMMQKRKGKSKKENHI 1869
WD40-rpts                                   

4 WD40-repeats found in QUERY=EG_PFE1270c (Len=1869):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 19   323-363      3.66  265.68  0.01625       25.0%     38.98
  WD 2:  Seg 23   367-405      3.21  247.12  0.02872       15.0%     42.88
  WD 3:  Seg 61  1249-1281     3.68  266.63  0.01578       25.0%     38.86
  WD 4:  Seg 77  1686-1740     3.28  250.20  0.02614       15.0%     39.44

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  323-363    -YTCIKILT------------GHNARVWDIDMGKFKNK---LFFFTCSEDSMCNVYS
   WD 2  367-405    -NKFFKYSN------------NSSSTIRCILYHHYMQL---I--ISGSDNGTLHIKP
   WD 3 1249-1281   NSDF------------------HAKNVSFLLWF-DENY---F--CTCSEDGTIKLMY
   WD 4 1686-1740   NNGMIIIYQLDKKLKLLKKIHIHQNGINKICVKKKQKDYLQI--YTCSDDQSINILI

   WD40 Template    TGECLRTLS------------GHTSGVTSVSFSPDGKR---L--VSGSEDGTIKVWD