Input parameters:

  Query = EG_PFF0330w (Len=1512)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFF0330w, Len=1512):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLVKCETKSQRVKSISFHPKINMILAGLHNGVIQLWDYRIGILIDKFEEHEGPVRGIDFHNVQPLFVSGADDYLIKVWNI 80  
WD40-rpts      (________________WD 1_______________)   (_________________WD 2________________) 

Query       81 HLKKCVFNLVGHLDYIRKVQFHEEYPWILSASDDQTIRIWNWQSRVCIAILTGHNHYVMCAEFHPNLDYIISCSLDKTLR 160 
WD40-rpts        (_________________WD 3________________)   (_________________WD 4______________

Query      161 VWDIKLLREKNVISKGDHLDSSINNNNNNNIGRGVLNNNTYYSNNYLHPLNDKSYGLSKNVSNSDFLSNNQHNNNSSGVG 240 
WD40-rpts      __)   (________________WD 5________________)      (____________________WD 6_____

Query      241 NSYSFISNQQSINMFGASDAVCKFILEGHEKGVNCCTFHHNLPLIASGSDDKLIKIWRFNDSKCWELDTLRGHFNNVSSL 320 
WD40-rpts      _______________)   (_________________WD 7________________)(____________________W

Query      321 VFHRTNDDLLLSNSEDHTIRIWDINKRSCIHTFRRENDRFWILSFKVNSKLIAAGHDSGMVIFKFHKEKCPFDKYEHYLF 400 
WD40-rpts      D 8___________________)   (________________WD 9________________)                

Query      401 YCKDKQICLYDIIKDTNTTLCPVRKYGNVMSNGYHQLIYNQFCTTYIAIIFIYKEDSMHRTNGSSHQDDEIDEDDESTNH 480 
WD40-rpts                                        (_________________WD10________________)       

Query      481 NLYNNNNNNNNKNNITHQQQYYSFDLIIWENKSARMNNNNNNNNMSNNMSNNNNNYHNPNNPSSSSFNFFKPWSSRKDQS 560 
WD40-rpts                                                                                      

Query      561 IKNNTNKNNIHHSNNINNVNNVNCGDDVKYIIKNKYCCFATFISRNKYIFVEKKNNNNYVLNIHNIPEDNLYKKIEVPFK 640 
WD40-rpts                                                                                      

Query      641 VDRVHSLNNNRIIIFGEHHIYLYDMNLKKILNEIHHTDTIISVEVIKDYIAFVFKYNIVITTIDLQHLCTTHEYIRIKSG 720 
WD40-rpts                                                                                      

Query      721 IWDERKNNNSNVFIYNTLSHLKYILINGEKGLIKYMDETVYLFKIYNNHLYYINRQENVKNILLNDTEYLFKMCLINNDE 800 
WD40-rpts                                                                                      

Query      801 HMAYQYLNMNTSNKKKKNTMLNNNNNNNNNNNVVPLNEKKKLYFSYNLIGYIKKKGFANLAVQMVNNNNTLFNLSVQLGH 880 
WD40-rpts                                                                                      

Query      881 LNNALKAAKKIDKTHIWNILSVHALMLGNFEIAEYALQRTKSYDKLSFLYFFSGHIEKLKKMLSISMIRNDFISIFLNSL 960 
WD40-rpts                                                                                      

Query      961 YLGDIEQRINIFIQQNQLNLALLCSHLYNIPINLSDKQCEFDINECNYCPKKSYYLCPPIPILKIDDTLNTSQKKKNNIP 1040
WD40-rpts                                                                                      

Query     1041 SFSDHINTNQTKKNVMNNLNNNNTQMNVTNNILWNNSYNWPVINYEQTNYKIKTPTELNEKQDAYLKDKNNPIYNVHTNY 1120
WD40-rpts                                                                                      

Query     1121 KDHLTRGDKTNISQEHITNILTDEKKKKDEESYNSEVNKFEGKSDFSDENDIWKNDVNDEDINIMDLDIQDNQNILNKQS 1200
WD40-rpts                                                                                      

Query     1201 LKIEKGENILQQSLKRNGKIIDFIRTGNISTSLKLISKKYGIVHMEPFKPIIKNIYISTYVYITPMQNLEPLKIPVHMNE 1280
WD40-rpts                                                                                      

Query     1281 NNLNNIYITKHFLYTQIKKAHKLVTLGKFTQALNLFRNILYHMIFVETNESEQDLYDYLEMVISYILAMRLEEERNVTST 1360
WD40-rpts                                                                                      

Query     1361 SDPRRSLELMAYFTCCSLQNSHLYLVLRRGMGLAWKAQNFVTAGSFAKRLINGNYENIKGAEEEIVKAKKILLMCEQKST 1440
WD40-rpts                                                                                      

Query     1441 EQFDIDYDPNDYNNMKICCVSLTRIKPKDEVVICPFCQSVAKKEFTSTICPNCLVAKLGIKALGFDFLNKNI 1512
WD40-rpts                                                                              

10 WD40-repeats found in QUERY=EG_PFF0330w (Len=1512):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-37       7.77  435.52  8.4e-05       27.5%     47.40
  WD 2:  Seg  4    41-79       8.63  471.21  2.8e-05       30.0%     56.52
  WD 3:  Seg  8    83-121      9.30  498.95  1.2e-05       30.0%     57.45
  WD 4:  Seg 12   125-163      9.28  497.92  1.2e-05       35.0%     57.20
  WD 5:  Seg 16   167-204      4.05  281.93  0.00984        7.5%     48.68
  WD 6:  Seg 20   211-256      4.51  300.80  0.00549       10.0%     30.60
  WD 7:  Seg 23   260-298      8.28  456.81  4.3e-05       35.0%     55.33
  WD 8:  Seg 27   299-343      7.33  417.39  0.00015       42.5%     51.99
  WD 9:  Seg 31   347-384      6.43  380.09  0.00047       17.5%     54.56
  WD10:  Seg 40   435-473      3.79  271.34  0.01365       10.0%     47.67

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-37     ---M------LVKCETKSQRVKSISFH-PKINMILAGLHNGVIQLWD
   WD 2   41-79     -GIL------IDKFEEHEGPVRGIDFH-NVQPLFVSGADDYLIKVWN
   WD 3   83-121    -KKC------VFNLVGHLDYIRKVQFH-EEYPWILSASDDQTIRIWN
   WD 4  125-163    -RVC------IAILTGHNHYVMCAEFH-PNLDYIISCSLDKTLRVWD
   WD 5  167-204    -LRE------KNVISKGDH-LDSSINN-NNNNNIGRGVLNNNTYYSN
   WD 6  211-256    NDKSYGLSKNVSNSDFLSNNQHNNNSS-GVGNSYSFISNQQSINMFG
   WD 7  260-298    -AVC------KFILEGHEKGVNCCTFH-HNLPLIASGSDDKLIKIWR
   WD 8  299-343    FNDS--KCWELDTLRGHFNNVSSLVFHRTNDDLLLSNSEDHTIRIWD
   WD 9  347-384    -RSC------IHTFRRENDRFWILSFK-VNSKLIAAGH-DSGMVIFK
   WD10  435-473    -HQL------IYNQFCTTYIAIIFIYK-EDSMHRTNGSSHQDDEIDE

   WD40 Template    TGEC------LRTLSGHTSGVTSVSFS-PDGKRLVSGSEDGTIKVWD