Input parameters:

  Query = EG_PFF0395c (Len=345)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFF0395c, Len=345):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKRYNLKYCCDDVSVFPSSTLINHDNNKFSEYFGLTAISTYQLKNKEPNEEPKKKGKIYLFGLNQNIKDDDNNNCEIDYY 80  
WD40-rpts        (_____________WD 1_____________)         (_________________WD 2_______________

Query       81 LEYKKNINFHNGVLQSNYIFTNDKLYLGSVCVNGFYLSDLKEETYEKLLETSKEKNNSGLSFEAFDNKPEKICISFSNGD 160 
WD40-rpts      __)    (_____________WD 3_____________) (____________________WD 4_______________

Query      161 MCLLVHGQQEKTWKAHEYHVWSCTFNGNENVITTGSDDCSFVIWDLRTTTISQQNKKSHTQGITAVKFENFSELLYTASY 240 
WD40-rpts      ____)(_________________WD 5_________________)     (________________WD 6_________

Query      241 DNNIRIFDLRNIREPIQTVDVNSNIWRIKFLYKNNSVDNLLVAACDGGAKIFKKSNNDFIYDKGIFNNNELTYGIDVIDM 320 
WD40-rpts      _______)   (__________________WD 7__________________)            (______________

Query      321 LRPKNEKKKIYLSCSFYNKEVQLWD 345 
WD40-rpts      ___WD 8_________________)

8 WD40-repeats found in QUERY=EG_PFF0395c (Len=345):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     3-34       3.46  257.48  0.02091       10.0%      5.70
  WD 2:  Seg  4    44-83       5.94  360.17  0.00087        2.5%     -0.95
  WD 3:  Seg  6    88-119      3.04  240.25  0.03543       17.5%     40.82
  WD 4:  Seg  9   121-165      6.99  403.40  0.00023       12.5%     54.02
  WD 5:  Seg 13   166-205     11.20  577.31  1.0e-06       27.5%     53.16
  WD 6:  Seg 17   211-248      9.27  497.40  1.2e-05       27.5%     48.48
  WD 7:  Seg 20   252-293      6.75  393.57  0.00031       15.0%     55.72
  WD 8:  Seg 25   306-345      5.53  343.06  0.00148       15.0%     32.89

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    3-34     ------------RYNLKYCC-DDVSVFP---SST-LINHD-NNKFSEYFG
   WD 2   44-83     KNK-----EPNEEPKKKGKI-YLFGLNQ---NIKDDDNNN-CEIDYYLEY
   WD 3   88-119    -------------NFHNGVLQSNYIFTN---DKLYLGSVC-VNG-FYLSD
   WD 4  121-165    KEETYEKLLETSKEKNNSGL-SFEAFDN---KPEKICISF-SNGDMCLLV
   WD 5  166-205    HGQ-----QEKTWKAHEYHV-WSCTFNG---NENVITTGS-DDCSFVIWD
   WD 6  211-248    --I-----SQQNKKSHTQGI-TAVKFEN---FSELLYTAS-YDNNIRIFD
   WD 7  252-293    -IR-----EPIQTVDVNSNI-WRIKFLYKNNSVDNLLVAA-CDGGAKIFK
   WD 8  306-345    FNN------NELTYGIDVID-MLRPKNE---KKKIYLSCSFYNKEVQLWD

   WD40 Template    TGE-----CLRTLSGHTSGV-TSVSFSP---DGKRLVSGS-EDGTIKVWD