Input parameters:

  Query = EG_PFF1000w (Len=650)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFF1000w, Len=650):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKDLNAINKLLSSNNEMNKKNNDSDNCVVIEDEIDENYAEGELEEKSEEDEVGDNNMNGNNIDDDNINDDDNYNYHDDNE 80  
WD40-rpts                                                                                      

Query       81 CDYEEDYDNGEDYYDDEYKYEKVQRKDIFLNIDKIGFYELVLKQLLDDNLIESYNIMKAELNNLEENKYVKGDFLFNMYL 160 
WD40-rpts                                                                                      

Query      161 KSDNLNFFQLLKREKCYEKDKNVDDEEIKREDKEKVKKEDDIKVKKEEEQKDEHEDDEKKFNNDENNENNENNNNNENNN 240 
WD40-rpts                                                                  (___________________

Query      241 NNENNNNNDDNDDNENNDDNSDDEKDDINNVSSDNPNILNKLVDNNVLNIKLKMYNNNNFILNYDVNSERVRRTYSYEVN 320 
WD40-rpts      ___WD 1______________________)   (_____________WD 2_____________)         (_____

Query      321 DQIELIHKNKCLCCDINYNNSILCSGGSDNIVKISKMYDIKNKKKIYNIDKHKGKVNCIKFHPFKNILFSGGDDCTIQII 400 
WD40-rpts      _____________WD 3__________________)      (_________________WD 4________________

Query      401 DVNKIFKMKKQNYYMRKEFEETYQNISIQDKNPYISMYVHPCGDFLYASNRNENILKMYDLQTLTCFKSIDTYKYHTSTI 480 
WD40-rpts      )                   (_________________WD 5_________________)        (___________

Query      481 NDIHGTIDGTMYSSVSDDGHIKIWDGHNSKLVHTQFNAHNGYSIESVKFNKSGFYMLTAGLDGQSKIWDLRNFKSLFTFG 560 
WD40-rpts      _____WD 6_______________)(___________________WD 7___________________)   (_______

Query      561 NGLSCSSNKSIFMNNEYFIANIIQPNEYFKSQLYIYNAYFGNMEYNIQNIHNDKISDIVNAAGLFSVYTSGYDCLCKHIQ 640 
WD40-rpts      _____________WD 8___________________)   (_________________WD 9_________________)

Query      641 IEQRYLSTLN 650 
WD40-rpts                

9 WD40-repeats found in QUERY=EG_PFF1000w (Len=650):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   221-270      5.74  351.65  0.00113        7.5%     19.49
  WD 2:  Seg  4   274-305      3.59  262.79  0.01776       10.0%     39.34
  WD 3:  Seg  8   315-356      7.23  413.29  0.00017       15.0%     45.46
  WD 4:  Seg 11   363-401      9.45  504.84  9.8e-06       27.5%     57.59
  WD 5:  Seg 16   421-460      6.04  364.23  0.00077       15.0%     44.55
  WD 6:  Seg 20   469-505      9.32  499.55  1.2e-05       35.0%     44.53
  WD 7:  Seg 23   506-549      7.48  423.67  0.00012       25.0%     54.84
  WD 8:  Seg 27   553-597      4.79  312.32  0.00384       10.0%     32.81
  WD 9:  Seg 31   601-640      6.78  394.68  0.00030       10.0%     52.95

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  221-270    FNNDENNENNENNNN--NEN-NNNNE-NNNNNDDNDDNEN------NDDNSDD-EKDDINN
   WD 2  274-305    -DN----------PN--ILN-KLVDN-NVLNI-------K------LKMYNNN-NFILNYD
   WD 3  315-356    YSY----------EVNDQIE-LIHKN-KCLCCDINYNNSI------LCSGGSD-NIVKISK
   WD 4  363-401    -KK----------KI--YNI-DKHKG-KVNCIKFHPFKNI------LFSGGDD-CTIQIID
   WD 5  421-460    -ET----------YQ--NIS-IQDKN-PYISMYVHPCGDF------LYASNRNENILKMYD
   WD 6  469-505    -------------SI--DTY-KYHTS-TINDIHGTIDGTM------YSSVSDD-GHIKIWD
   WD 7  506-549    GHN-------SKLVH--TQF-NAHNGYSIESVKFNKSGFY------MLTAGLD-GQSKIWD
   WD 8  553-597    -FK----------SL--FTF-GNGLS-CSSNKSIFMNNEYFIANIIQPNEYFK-SQLYIYN
   WD 9  601-640    -GN----------ME--YNIQNIHND-KISDIVNAAGLFS------VYTSGYD-CLCKHIQ

   WD40 Template    TGE----------CL--RTL-SGHTS-GVTSVSFSPDGKR------LVSGSED-GTIKVWD