Input parameters:

  Query = EG_PFI0290c (Len=1010)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFI0290c, Len=1010):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPLNLDIKKKLNSRIGKVKCVDIHESENWILASLYSGKLVIFDYVNQNTIKNIEVSVFPIRCAKFIEKKQWIICGGDDMT 80  
WD40-rpts               (______________WD 1______________)   (_________________WD 2____________

Query       81 IRVYNYNTFEKIKSFEDHTDYIRYIEVHQTLPYILTSSDDMTIKLYDYENNFEKLCSFENHIHYVMMCKFNPKDTYIFAS 160 
WD40-rpts      ____)   (_________________WD 3________________)    (_________________WD 4_______

Query      161 ASLDKTIKIWGVQNNTSVVTKPHFTLSGHTKGVNCIDYSCSGETSYIISGSDDKTIRIWDYHTKQCIQVLSGHTQNISCV 240 
WD40-rpts      __________)        (__________________WD 5_________________)   (________________

Query      241 IYHSNLPIILSSSEDCNVKIWNSSMFKLESTLNYNMDRCWSLCAKKTKNDLCIGYDEGLVVIQIGSDVPIYTMFKNKIIY 320 
WD40-rpts      _WD 6________________)   (_________________WD 7________________)                

Query      321 IKNTDIFIINLQNVQEENYNDGDIYKVNKKELGNCDFYPTNVSFHPSGRFICVNGHHEFNIYTSQVLRNKAYGKSSFFVW 400 
WD40-rpts                             (__________________WD 8_________________)                

Query      401 SHTGDYAIKDEGNKVSIYKDFTSHHIFQTPYTITQLFGGYLLGVKSNNFICFYDWSDYSLIRKIDINVKNVFWNDSGTYV 480 
WD40-rpts                                                            (_________________WD 9____

Query      481 AISTEDSIYILNYLNSDGNLSKDNINKNNDTINNNNNSNNNGNIELIGVQNRNINHPQHVENKMDEENYFQLESEINESI 560 
WD40-rpts      ____________) (___________________WD10__________________)                       

Query      561 ESGIWIYDSFLYISKNLRLYIYTKKFIDIYAYIDKYLYICGYVYEYDRIFLLDKNFNFYSFFLPITYLQYQKYIMGQDFI 640 
WD40-rpts                                                                                      

Query      641 AADNIMKNIPESLYNKLSLFLEKMGYKNKALNICNDLEKKFELSLSIGNLQLCVDIINELERKENDSFVHNKYKKLGDTA 720 
WD40-rpts                                                                                      

Query      721 LVYNDIPMAIYCYKKTNDFSSLLIILSTLGDKIGIEELGQMCLNHQKFNIAFICYFLLHKINKCIHILLSNNNFAYAAFF 800 
WD40-rpts                                                                                      

Query      801 SRVYKPSLLPTILKKWKEHLNKVYPNIPVNLLNPEENPEYFPDYDKAVECEKIFDKVNTIGSTKNYNTLKTLIDLNIVEE 880 
WD40-rpts                                                                                      

Query      881 IKEIGYDKVEDIFIKQFNEELEKDIQNFDQNGKIFLTEESKNKNVNQKEDNKEINKENNKDDNKENNKEDNKEYNKEDDK 960 
WD40-rpts                                                                                      

Query      961 EDDKEDDKEDDKFCKMEDTELLSNIQIQEDNKNINSYSINSNQSMDEELL 1010
WD40-rpts                                                        

10 WD40-repeats found in QUERY=EG_PFI0290c (Len=1010):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    10-43       4.40  296.49  0.00627       12.5%     49.76
  WD 2:  Seg  4    47-85       6.75  393.37  0.00031       15.0%     56.35
  WD 3:  Seg  8    89-127      7.78  435.93  8.3e-05       22.5%     55.69
  WD 4:  Seg 12   132-171      7.10  407.95  0.00020       35.0%     55.20
  WD 5:  Seg 16   180-220      8.18  452.67  4.9e-05       45.0%     43.72
  WD 6:  Seg 19   224-262      9.15  492.45  1.4e-05       32.5%     55.59
  WD 7:  Seg 23   266-304      4.09  283.52  0.00937       15.0%     53.40
  WD 8:  Seg 30   344-384      3.40  255.13  0.02247       17.5%     41.18
  WD 9:  Seg 41   455-493      3.01  239.08  0.03672       12.5%     44.69
  WD10:  Seg 45   495-537      3.82  272.53  0.01316        2.5%     16.35

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   10-43     ----------KLNSRIGKVKCVDIHE-SEN--WILASLYSGKLVIFD
   WD 2   47-85     -QN---T-IKNIEVSVFPIRCAKFIE-KKQ--WIICGGDDMTIRVYN
   WD 3   89-127    -FE---K-IKSFEDHTDYIRYIEVHQ-TLP--YILTSSDDMTIKLYD
   WD 4  132-171    -FE---K-LCSFENHIHYVMMCKFNPKDTY--IFASASLDKTIKIWG
   WD 5  180-220    -TK---P-HFTLSGHTKGVNCIDYSC-SGETSYIISGSDDKTIRIWD
   WD 6  224-262    -KQ---C-IQVLSGHTQNISCVIYHS-NLP--IILSSSEDCNVKIWN
   WD 7  266-304    -FK---L-ESTLNYNMDRCWSLCAKK-TKN--DLCIGYDEGLVVIQI
   WD 8  344-384    IYK---VNKKELGNCDFYPTNVSFHP-SGR--FICVNGHHEFNIYTS
   WD 9  455-493    -WS---D-YSLIRKIDINVKNVFWND-SGT--YVAISTEDSIYILNY
   WD10  495-537    NSDGNLS-KDNINKNNDTINNNNNSN-NNG--NIELIGVQNRNINHP

   WD40 Template    TGE---C-LRTLSGHTSGVTSVSFSP-DGK--RLVSGSEDGTIKVWD