Input parameters:

  Query = EG_PFI1080w (Len=820)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFI1080w, Len=820):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKSNLDKKKKKKVQGITGDVKVTSTEDAENDKRKASIKNNKNETFSRFLFPKNPRAFTNLVEYSFSNEQFVTIENIDHTV 80  
WD40-rpts                                                                                      

Query       81 FHLDIKSCLVRKDSDEGKKQMELIKKKIEKANAFTLLKDNDYIYHKPKNCFDYIDRYSQTVPRSFKDECTKTEPQEINEI 160 
WD40-rpts                                                                                      

Query      161 CDTVSQSIIYDAYLHEFQKISNGADGNDKEKYNNDKKDNDDKSKKNNSLSMGLLSDHASSSYSGECSDDDKIGGILFSSE 240 
WD40-rpts                                                                                      

Query      241 SSCSNKTYMFSDNDEFENYKENYEDGSDDYMDYDDNNYEDYDDEDNNDNDDYNDGNIYDNDKNVEIHKSSIKNEKDNYDS 320 
WD40-rpts                                                                                      

Query      321 NMIEEYNKEEEYKDCSYVDEKLKKNKNHLDKLNKNNETRKTKQMRKGDKKKRIKKESISGKHELYFINYKDINEQQHKQL 400 
WD40-rpts                                                                                      

Query      401 NFIYHDNNIKKNDKKILYKKNFLKTLKLMDRIYNKNNEEEIYLCYKNKNNKNILTKLWIFSLNIYQLVVTDIKFHPLYED 480 
WD40-rpts                                                                                      

Query      481 LFAISFKNNDFKINMGILCCFTFKNTKNPEHFLKTNFHIHSIEWSTINTSIIIVGLSNGNICIYDLKKNKKESLIFESNF 560 
WD40-rpts                            (___________________WD 1__________________)            (__

Query      561 KELYNRDIISQIIFHPQIKIFYSVSYDGYIYQWKYNHKFTVGEKLLTLEKDIDDYNNTLNIIHTQSITCIDFNPFKINLF 640 
WD40-rpts      ______________WD 2_______________)                                              

Query      641 LIGTNKGKIYLYSSTYSDHYLNIYNEHTMSINSLSYNKFKRDIFISSSYDWTIRIWTQSRKTSLIIFDIKECVYDVKWSP 720 
WD40-rpts                       (_________________WD 3_________________)                       

Query      721 SLSTCFFVISSNGTGKLHIYDLSIDINKEIICEIITKKRKLRKLCVNKFNEVILIGEENGYIYSYKISYSFNPCYMDYLK 800 
WD40-rpts                           (____________________WD 4___________________)              

Query      801 GKRNQYFQIEIMDSFLSKVK 820 
WD40-rpts                          

4 WD40-repeats found in QUERY=EG_PFI1080w (Len=820):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 12   503-545      3.40  255.13  0.02247       15.0%     42.55
  WD 2:  Seg 17   558-594      4.74  310.61  0.00405       22.5%     45.48
  WD 3:  Seg 24   658-697      5.70  350.01  0.00119       27.5%     45.57
  WD 4:  Seg 31   742-786      3.66  265.72  0.01623       12.5%     56.48

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  503-545    FK-----NTKNPEHFLKTNFHIHSIEWSTINTSIIIVGLSNGNICIYD
   WD 2  558-594    SN-----F-----KELYNRDIISQIIFHP-QIKIFYSVSYDGYIYQWK
   WD 3  658-697    -D-----HYLN--IYNEHTMSINSLSYNKFKRDIFISSSYDWTIRIWT
   WD 4  742-786    LSIDINKEIIC--EIITKKRKLRKLCVNK-FNEVILIGEENGYIYSYK

   WD40 Template    TG-----ECLR--TLSGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD