Input parameters:

  Query = EG_PFL0470w (Len=792)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFL0470w, Len=792):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVLELVVNLENHKRRIWSICWSPDGNYLASVGADKYIMIWVKKNNEKIRKTNNSNKIMKKALNIFGEKTQIKSNIEFDIY 80  
WD40-rpts       (_________________WD 1_________________)                                 (_____

Query       81 DIIETQHEKSLRHIEFSKDGSFFVVASFDSKCSIYKKNNNDKWVYYKMLEGHEKEVKCASIHPSNKYIVTCGRDKSIWVH 160 
WD40-rpts      _____________WD 2__________________)      (_________________WD 3________________

Query      161 AKGDVGKTDMKSKNHTNDKNGDSVKNDDSFKNDDSFKNDDSVKNGDSVKNDDSAKNDDRVKNGDSVKNGDSVKNGDSVKN 240 
WD40-rpts      )    (__________________WD 4_________________)(_________________WD 5____________

Query      241 DDIYKNDDRVKNDDNYKNDDNVINDDSVKNDKNNTSDHILQDDQALTNHDINNNNLQNSNSLDFHFDAYLTAHTEDIKFV 320 
WD40-rpts      ____)      (_________________WD 6________________)              (_______________

Query      321 SWCPLSENTFISLSYDNSLKLWSKIMNEWNCIQTLNEHTSVVWCVTFNFDGSQFATCSDDKTIRIWKSDKKLNYNLHKYP 400 
WD40-rpts      __WD 7________________)     (_________________WD 8________________)(____________

Query      401 FLYERTIKDLKDTSYSKETSKNMDEEKVTGNNNTCENKNVGQNDDTLNNNNNNNINSVNNNNNHVVGGLHQTQTCEGKEL 480 
WD40-rpts      ___________WD 9_______________________)(_________________WD10_________________) 

Query      481 AERTNQMTEVKSRSKENINNTDINKSNSQEVVKSKGKSENKIFKKTTNFFSKLKEIKSKKENEQKNILSNITIVNYSEQK 560 
WD40-rpts      (___________________WD11___________________)  (__________________WD12___________

Query      561 DDLGTLSKVYIQHNFVPLYFNNGLFKYVYNFSQVEDNTNINNDLKKKDQHNKKNNIKDHVTKNLDNDITNNIQSDQIHNN 640 
WD40-rpts      _______)    (________________WD13________________)       (_________________WD14_

Query      641 DILDKNSNHTNIEIEYKPKREYVEEFQETSLHISEDTNSTIKQNILKKDQNVNDTNFDDWRVNNVIQGYHKRSVSYIDWN 720 
WD40-rpts      _______________)   (_________________WD15________________)(__________________WD1

Query      721 SYEDLIAASSFDNSLKIFKKINEEWELISNVDNAHMSDVNCVVWCPQKYQDYFLLATAGDDCVINIWKYTKG 792 
WD40-rpts      6_________________)(______________________WD17_____________________)    

17 WD40-repeats found in QUERY=EG_PFL0470w (Len=792):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     2-41       9.71  515.57  7.0e-06       32.5%     53.76
  WD 2:  Seg  8    75-116      7.66  431.00  9.7e-05       20.0%     51.15
  WD 3:  Seg 12   123-161      8.39  461.08  3.8e-05       27.5%     52.09
  WD 4:  Seg 16   166-206      6.73  392.66  0.00032       22.5%     47.55
  WD 5:  Seg 20   207-245      6.77  394.43  0.00030        7.5%     45.14
  WD 6:  Seg 24   252-290      7.02  404.78  0.00022       10.0%     45.44
  WD 7:  Seg 27   305-343      7.78  435.87  8.3e-05       27.5%     51.27
  WD 8:  Seg 31   349-387      9.74  516.82  6.7e-06       40.0%     52.17
  WD 9:  Seg 35   388-439      6.68  390.61  0.00034       12.5%     53.67
  WD10:  Seg 39   440-479      5.09  324.91  0.00260       15.0%     40.51
  WD11:  Seg 43   481-524      6.27  373.64  0.00057        5.0%     39.74
  WD12:  Seg 47   527-568      3.81  271.84  0.01344       12.5%     30.25
  WD13:  Seg 50   573-610      5.69  349.65  0.00121       10.0%     40.44
  WD14:  Seg 54   618-656      2.88  233.73  0.04321       10.0%     17.81
  WD15:  Seg 58   660-698      4.07  282.71  0.00961        7.5%      8.57
  WD16:  Seg 62   699-739      8.36  460.20  3.9e-05       15.0%     54.71
  WD17:  Seg 66   740-788      6.67  390.23  0.00034       25.0%     48.04

Multiple sequence alignment of 17 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    2-41     VLE------------LV--V----NLE-N-HKRRIWSICWSP----DGNYLASVG--A--DKYIMIWV
   WD 2   75-116    IEF------------DIYDI----IET-Q-HEKSLRHIEFSK----DGSFFVVAS--F--DSKCSIYK
   WD 3  123-161    -WV------------YY--K----MLE-G-HEKEVKCASIHP----SNKYIVTCG--R--DKSIWVHA
   WD 4  166-206    -GK------------TD--M----KSK-N-HTNDKNGDSVKN----DDSFKNDDSFKN--DDSVKNGD
   WD 5  207-245    -SV------------KN--D----DSA-K-NDDRVKNGDSVK----NGDSVKNGD--S--VKNDDIYK
   WD 6  252-290    -ND------------DN--Y----KND-D-NVINDDSVKNDK----NNTSDHILQ--D--DQALTNHD
   WD 7  305-343    --H------------FD--A----YLT-A-HTEDIKFVSWCP---LSENTFISLS--Y--DNSLKLWS
   WD 8  349-387    -WN------------CI--Q----TLN-E-HTSVVWCVTFNF----DGSQFATCS--D--DKTIRIWK
   WD 9  388-439    SDKKLNYNLHKYPFLYE--R----TIK-D-LKDTSYSKETSK----NMDEEKVTG--N--NNTCENKN
   WD10  440-479    VGQ------------ND--D----TLNNN-NNNNINSVNNNN----NHV-VGGLH--Q--TQTCEGKE
   WD11  481-524    AER------------TN--QMTEVKSR-S-KENINNTDINKS----NSQEVVKSK--G--KSENKIFK
   WD12  527-568    TNF------------FS--K----LKE-I-KSKKENEQKNIL----SNITIVNYS--EQKDDLGTLSK
   WD13  573-610    --H------------NF--V----PLY-F-NNGLFKYVYNFS----QVEDNTNIN--N--DLKKKDQH
   WD14  618-656    -DH------------VT--K----NLD-N-DITNNIQSDQIH----NNDILDKNS--N--HTNIEIEY
   WD15  660-698    -RE------------YV--E----EFQ-E-TSLHISEDTNST----IKQNILKKD--Q--NVNDTNFD
   WD16  699-739    DWR------------VN--N----VIQ-GYHKRSVSYIDWNS----YEDLIAASS--F--DNSLKIFK
   WD17  740-788    KIN-------EEWELIS--N----VDN-A-HMSDVNCVVWCPQKYQDYFLLATAG--D--DCVINIWK

   WD40 Template    TGE------------CL--R----TLS-G-HTSGVTSVSFSP----DGKRLVSGS--E--DGTIKVWD