Input parameters:

  Query = EG_PFL0610w (Len=1251)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFL0610w, Len=1251):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEEPVNTIKKIKSNMSKICFNKSNKLNADFKDDHIEIILDNKNITPKPIYFNFQEAETKKSFDQIDELLKQFDEKNDYTR 80  
WD40-rpts                                                                                      

Query       81 NDTQKKIVHKEDEEQIKDILNTEKKKKIGKREFFNYINKKRDTKWTPYEKEISDTYDEIILCESETIVLMNIPNTLNDID 160 
WD40-rpts                                                                                      

Query      161 EEKLKVEEKNKLYEKLLNNDESNYISKSMQTLSVFKKNKDIYVSTINKQSKSTQTNLYELYKLTIMNPTDISQLLHKRFV 240 
WD40-rpts                                                                                      

Query      241 KYRNKKLKKIMDEYGDSLNINERVILKKNMWVQVVDKNVADNKQTTIIPKSFYKSRKNNTSLFNTLFMTKNISRTFSNKS 320 
WD40-rpts                                                                                      

Query      321 RTMRTKNRYKNMKTMKFLTSSFSEDEYLIKSIIKKKKEENDIPEEDPYEEDNSRGIPWIINNKKKKLNKSNFIFLIKQIE 400 
WD40-rpts                                                                                      

Query      401 KCIVQNIYVYQQMIYKNIHLNYLRQVENYDVKMFDGENYDALTNPNINYKKKKILIKIKIKTNMKKLCNLKKKIKDINKM 480 
WD40-rpts                                                                                      

Query      481 KGNNIPKQPNHSNDTISIHSIKHHIHILSKKKKEKIAKKIFINKLKNNIRKKIKKKKKKKKRNKQEYDTNENNYSDFQKN 560 
WD40-rpts                                                                                      

Query      561 KQDNDLTHKRNNNDHINVNKNIKITNDPITGTKTKDECSEDLLENKTSIENFKKIEDDKIFDILINDESKEDKLKKISTI 640 
WD40-rpts                                                                                      

Query      641 IIDDVLHNKKKKPSDLLERDNFEKKKFEYILKRKKGFTTINVNRLKLIKEVKQDYIYKYYNNDILNDHIYNNINNNDNSI 720 
WD40-rpts                                                                                      

Query      721 YNEYTNMLDHINEDSNNIVLDLNNNIEHTNSIEYNNILYKRKKKKYIKNISINKLFQFHYNKLENIVTSIDTNKFYKDYI 800 
WD40-rpts                                                                                      

Query      801 SSSYSNTLDIGSFQNSKGNIAIFSFINPNYPLKLYNVNCSVMKIKYSKNNPNLLVSALSNGHIYIYDIRQKDETPVLKST 880 
WD40-rpts                              (___________________WD 1__________________)            (

Query      881 TIKNYYENCYEPIYDLSFKNQYTNNNSFENIFYSAHENGSVYQWNIEKELKTKEILYLKNKKNDLYQDLSSVFVNKNLVN 960 
WD40-rpts      ____________________WD 2____________________)                                   

Query      961 KPFNSSLTCIDIDYYMHHDEDFIISNIEKNDSSEFNKNENNPYVQVNENKNIQQKKDLIKKSQNKLNHKTTPLEKDNYNN 1040
WD40-rpts                                                                                      

Query     1041 YISKEEELLNHYKNITKNIIDKKIKPTHSYYYIGTKNGIIYRCNSCYQKSYLNYYIAHFGAVNRIKINKFDHDIFISAGE 1120
WD40-rpts                                        (________________________WD 3_________________

Query     1121 DCTVKLWNRFRNTQITTFKSKNAFSSINDIIWSPNNSTSFFCCSDDGRIELWDFDFFSKDPLIIFYPNNLEASKITTLKM 1200
WD40-rpts      _______)(____________________WD 4___________________)                           

Query     1201 FNKEDILLCGDNLANVSMMKIKNLFNLKLDEYEQKMKLTNCLNYLDTYDYF 1251
WD40-rpts                                                         

4 WD40-repeats found in QUERY=EG_PFL0610w (Len=1251):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 13   825-867      2.98  237.77  0.03821       22.5%     42.81
  WD 2:  Seg 18   880-925      2.82  231.15  0.04673       17.5%     39.44
  WD 3:  Seg 25  1075-1128     3.86  274.12  0.01253       27.5%     43.17
  WD 4:  Seg 29  1129-1173     3.28  250.01  0.02629       22.5%     45.53

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  825-867    FINPN----------YPLKLY---NVN----CSVMKIKYSKNNPNL-------LVSALSNGHIYIYD
   WD 2  880-925    T-TIK----------N--YYE---NCY----EPIYDLSFKN-QYTNNNSFENIFYSAHENGSVYQWN
   WD 3 1075-1128   TKNGIIYRCNSCYQKS--YLNYYIAHF----GAVNRIKINKFDHDI-------FISAGEDCTVKLWN
   WD 4 1129-1173   RFRNT----------Q--ITT---FKSKNAFSSINDIIWSPNNSTS-------FFCCSDDGRIELWD

   WD40 Template    TGECL----------R--TLS---GHT----SGVTSVSFSP-DGKR-------LVSGSEDGTIKVWD