Input parameters:

  Query = EG_PFL1175w (Len=595)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFL1175w, Len=595):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MHNNHIFEDDDIILTDRFLSDESSENDKREKKKYIKENKKNIENVSNVLLNNNFNKNVGMKRNNSIFNNEENKDKNYFTN 80  
WD40-rpts                                                                                      

Query       81 NDLIEHKNKSLLKDKSNEFSFNKHNYSNTRYDNNVTGNYFDFDNYYVSNMDNTNNPEKEIYKYDENIEIDGKNKKNNKRL 160 
WD40-rpts                                                                                      

Query      161 KRSTRVWHDSDDDIDVKNEHLDTYGNYLNEEKFHSDDSNEFNYVDEKEDENLIRNIEAHDNVFEEYIDEHVHMENISSNT 240 
WD40-rpts                                                                                      

Query      241 NKDAISHIQADDIYIFDDEKIDMHIQKKKKWNKKNDNNIFLKYFLQKFTIHQIEEKKVKQLVCLPKSNLIFPVYNLNLYM 320 
WD40-rpts                                                                                      

Query      321 LKYEDNSLNISKKISFKRKIKYVQEYKDNLYILSYDNFLRNYNLEKGLVYKNRIHYDKLDISLPREIKFVDKNTEDENNT 400 
WD40-rpts         (_________________WD 1_________________)            (____________________WD 2

Query      401 SSSYLFSLSFQNSGKINVYDSRSYDIIKTFEMSNKYVGMNFHKKSNSLFALDEKGYLYNWCLNTNKLIDKLVDNYSIFPS 480 
WD40-rpts      ___________________)  (_________________WD 3________________)   (_______________

Query      481 CLNIYNDYLITGSCNGFLNLFDINNLNTPIKSFKNLTLRVHDIVYNPSHNMLLYYTDIMKNGIKLIDLKTKYVYCNVPWF 560 
WD40-rpts      _WD 4________________)    (__________________WD 5_________________)   (_________

Query      561 NINVKYNIYAANFFNNGNNLCFAVSSNSFYVYNIY 595 
WD40-rpts      __________WD 6__________________)  

6 WD40-repeats found in QUERY=EG_PFL1175w (Len=595):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   324-363      3.76  269.94  0.01425       10.0%     36.09
  WD 2:  Seg 10   376-420      3.82  272.58  0.01314       17.5%     25.74
  WD 3:  Seg 13   423-461      6.16  368.94  0.00066       12.5%     53.06
  WD 4:  Seg 17   465-502      5.98  361.68  0.00083       17.5%     52.30
  WD 5:  Seg 21   507-547      6.08  365.97  0.00073       17.5%     52.96
  WD 6:  Seg 25   551-593      5.61  346.46  0.00133       10.0%     52.24

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  324-363    EDNSLNISKK-----ISFK----RKIKYVQEYKDNLYILSY--DNFLRNYN
   WD 2  376-420    YDKLDISLPREIKFVDKNT----EDENNTSSSYLFSLSFQN--SGKINVYD
   WD 3  423-461    -SYDIIKTFE-----MSNK----YVGMNFHKKSNSLFALDE--KGYLYNWC
   WD 4  465-502    -NKLIDKLVD-----NYS-----IFPSCLNIYNDYLITGSC--NGFLNLFD
   WD 5  507-547    -NTPIKSFKN-----LTLR----VHDIVYNPSHNMLLYYTDIMKNGIKLID
   WD 6  551-593    -KYVYCNVPW-----FNINVKYNIYAANFFNNGNNLCFAVS--SNSFYVYN

   WD40 Template    TGECLRTLSG-----HTSG----VTSVSFSPDGKRLVSGSE--DGTIKVWD