Input parameters:

  Query = EG_PFL1290w (Len=636)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFL1290w, Len=636):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKFQNKRKKKHFVKNKKGNEKNKANKNIDDSEIESDDILSSQDSDNNVTFLNKKKKLNYDEEDYSDEDINNNKNVDEEND 80  
WD40-rpts                                                                                      

Query       81 DNEYENVFNNPEERKIYLAKKYLKDMGIESSDEDNEEEDSSDEAQSIHSAESQKSIDDKLSDDPFSSDEESDKKKKKKKV 160 
WD40-rpts                                                                                      

Query      161 SNVLIDNEKSQSKKHLLNLGNKIKIFYDEKLSSNVTNRNNKNEFKLKTQQCNDNNNNINIHNNILCDNKNLIFYYGHKKS 240 
WD40-rpts                       (____________________WD 1___________________)                  

Query      241 VTCVASPDYNLSFVDQYEYKNEHNVNKYNGYNNGKFFYQNNENNNINDIHNNNYCGEEDMSNNHNKDDIIMEPKFFENTS 320 
WD40-rpts                           (_________________WD 2________________)(________________WD 

Query      321 INTIYTGGKDACIIEWDIIKGEKVHIYKGNKNSFTGFGDKNSISHFKSVMDIYCNKYNSFFISVGSDNLINVWDNRINNK 400 
WD40-rpts      3_______________)                  (_________________WD 4________________)    (_

Query      401 CTNSIIGHKNIISGIVGCNSNIEELHMDHNFFTSSYDKTIKLWDLRFFDKCINTYLGHTNNILTMNSIDQNKLITSSSDY 480 
WD40-rpts      ___________________WD 5____________________)    (________________WD 6___________

Query      481 TLRVWNTKNDNHILFNINYEIIESCCTLNNRIFIAGTFSGHIYVFNSSYKKPICIQQNAHNSFSITSLISIPYTNIFISG 560 
WD40-rpts      _____)(_________________WD 7_________________)(___________________WD 8__________

Query      561 SYDGYVHFWQFKNMNKISASVQKIMTVQVNGTVNKFSFAHNYRYLYIAIGNEMRHGSWTKTKNKNGLAIIPLHFLA 636 
WD40-rpts      _________)        (_________________WD 9_________________)                  

9 WD40-repeats found in QUERY=EG_PFL1290w (Len=636):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   178-222      4.86  315.28  0.00351        5.0%     14.75
  WD 2:  Seg  7   262-300      4.97  319.87  0.00304        5.0%     35.20
  WD 3:  Seg 10   301-337      5.68  349.26  0.00122       15.0%     41.56
  WD 4:  Seg 14   356-394      8.13  450.32  5.3e-05       22.5%     41.61
  WD 5:  Seg 17   399-444      7.61  429.21  0.00010       25.0%     52.98
  WD 6:  Seg 21   449-486      8.36  459.87  3.9e-05       32.5%     50.79
  WD 7:  Seg 25   487-526      7.31  416.63  0.00015       15.0%     48.12
  WD 8:  Seg 29   527-570      8.61  470.16  2.9e-05       25.0%     54.95
  WD 9:  Seg 34   579-618      6.11  366.97  0.00071       10.0%     55.21

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  178-222    NLGNKIKIFYDEKLSSNVTNRNNKNEFKL-------K--TQQCNDNNNNINIHN
   WD 2  262-300    -EH-----NVNKYNGYNNGKFFYQNNENN-------N--INDIHNNNYCGEEDM
   WD 3  301-337    ----------SNNHNKDDIIMEPKFFENT-------SINTIYTGGKDACIIEWD
   WD 4  356-394    -GF-----GDKNSISHFKSVMDIYCNKYN-------S--FFISVGSDNLINVWD
   WD 5  399-444    -NK-----CTNSIIGHKNIISGIVGCNSNIEELHMDH--NFFTSSYDKTIKLWD
   WD 6  449-486    -DK-----CINTYLGHTNNILTMN-SIDQ-------N--KLITSSSDYTLRVWN
   WD 7  487-526    TKN-----DNHILFNINYEIIESCCTLNN-------R--IFIAGTFSGHIYVFN
   WD 8  527-570    SSY-KKPICIQQNAHNSFSITSLISIPYT-------N--IFISGSYDGYVHFWQ
   WD 9  579-618    ASV-----QKIMTVQVNGTVNKFSFAHNY-------R--YLYIAIGNEMRHGSW

   WD40 Template    TGE-----CLRTLSGHTSGVTSVSFSPDG-------K--RLVSGSEDGTIKVWD