Input parameters:

  Query = EG_PFL1470c (Len=502)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFL1470c, Len=502):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEQNKIMLVYDNHDVLLVNLDNERCESKFENSIKDDEKKICMLNNGNFLILNANKKMIYQYIYNKSTAIYTKYVRAHLNV 80  
WD40-rpts                         (___________________WD 1__________________)  (_______________

Query       81 IKLTTNERIIFGGDKIGNVYIWSAISGFLINTFQAHFGPIKDILIDQLVNVLYTYSDDNIVHVYNLHDLFRKKKIQPMLF 160 
WD40-rpts      __WD 2________________)   (_________________WD 3________________)             (_

Query      161 YQHNINSNIKQIISITPNIYDTLYTLISLTNDGTIYVWGLKSKEAVHILKTQTECCTYICSNYPFNTHLYVCKKNKIIRI 240 
WD40-rpts      _________________WD 4_________________)   (_________________WD 5________________

Query      241 PFLEFNKNKKNKRYKKNSSAYSHNKSDDIKLKEYGDYVQIKKIQTEQIENDEYDENDEYDEYDKNDENDKNDYNNYNGNK 320 
WD40-rpts      )(__________________WD 6_________________)                 (_________________WD 

Query      321 NYGDINNDYSDYYNQSSDDNNNTNDEDFNDSHHLNINYLHLETNKIIKSQNVVTNEMFLNLKDFTTFIGHKSQVLKCYVD 400 
WD40-rpts      7________________)   (_________________WD 8________________)(________________WD 

Query      401 DKKQILISLASDGIKIWDIYNCYAIKTLKYGENVINFYIPTFKNVSYLIELPNLVLEYEDNTNIHIIDEVNEHTFQSNYK 480 
WD40-rpts      9________________)   (________________WD10________________)                     

Query      481 NLLYNDQNLLINMANTFASHDM 502 
WD40-rpts                            

10 WD40-repeats found in QUERY=EG_PFL1470c (Len=502):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    20-62       6.55  385.32  0.00040        7.5%     52.61
  WD 2:  Seg  7    65-103      6.75  393.66  0.00031       10.0%     53.78
  WD 3:  Seg 11   107-145      8.84  479.93  2.1e-05       17.5%     55.58
  WD 4:  Seg 15   159-199      6.51  383.68  0.00042       22.5%     51.69
  WD 5:  Seg 19   203-241      6.94  401.21  0.00024       12.5%     54.67
  WD 6:  Seg 23   242-282      5.25  331.57  0.00211        5.0%     38.64
  WD 7:  Seg 27   300-338      3.15  244.68  0.03095        7.5%     -2.38
  WD 8:  Seg 29   342-380      6.07  365.55  0.00074        5.0%     33.81
  WD 9:  Seg 32   381-418      7.60  428.70  0.00010       32.5%     50.03
  WD10:  Seg 36   422-459      4.97  319.93  0.00303        7.5%     52.29

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   20-62     LDNERCESKF-ENSIKDDEKKICMLNNGN--FLILNANKKMIYQYI
   WD 2   65-103    KST---AIYT-KY-VRAHLNVIKLTTNER--IIFGGDKIGNVYIWS
   WD 3  107-145    -GF---LINT-FQAHFGPIKDILIDQLVN--VLYTYSDDNIVHVYN
   WD 4  159-199    -LF---YQHN-INSNIKQIISITPNIYDTLYTLISLTNDGTIYVWG
   WD 5  203-241    -KE---AVHI-LKTQTECCTYICSNYPFN--THLYVCKKNKIIRIP
   WD 6  242-282    FLE---FNKNKKNKRYKKNSSAYSHNKSD--DIKLKEYGDYVQIKK
   WD 7  300-338    -DE---YDKN-DENDKNDYNNYNGNKNYG--DINNDYSDYYNQSSD
   WD 8  342-380    -NT---NDED-FNDSHHLNINYLHLETNK--IIKSQNVVTNEMFLN
   WD 9  381-418    -LK---DFTT-FIGHKSQVLKCYVDDKKQ--ILISLASDG-IKIWD
   WD10  422-459    -CY---AIKT-LKYGEN-VINFYIPTFKN--VSYLIELPNLVLEYE

   WD40 Template    TGE---CLRT-LSGHTSGVTSVSFSPDGK--RLVSGSEDGTIKVWD