Input parameters:

  Query = EG_PFL1480w (Len=822)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFL1480w, Len=822):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNELVVFDTYHGRSINDCELDYYSKKLATCSSDNTVKIFDVSLSKEPVCVAELKDHSSAVWKVCWSHPKYGSLLASCSFD 80  
WD40-rpts      (_________________WD 1_________________)(_____________________WD 2______________

Query       81 KNVIIYKEVNINKYEMIYINNEHVSSVNYIEWSPHEYGLHLGCASSDGTISILSYYMNKGSNEGYWNKYSMKAHLNGVAC 160 
WD40-rpts      ______)      (__________________WD 3_________________)  (_____________________WD

Query      161 ISWEKPYNNILLMNKNLNDNNNNNNNNNNNNNNNNNNNNNNNDVINSFKLVSGGYDNQVIIWMFDNNTKEFQKIYQMNDK 240 
WD40-rpts       4____________________)(_________________WD 5_________________)  (______________

Query      241 PHKSSIKDVAWKPNLDNSANIIASCSDEKIVILWIEDVTNNVWKNGQIIKVKYNIHKISWSPNGTILAIACSDDNAYLYK 320 
WD40-rpts      ________WD 6______________________) (___________________WD 7___________________)

Query      321 ENAEGIWEEMCNLTEENNNIQDDNSMNMTNNEQENHNENMLNNDNNNNMNYTGNVNVDSASYMHDNTNASNLNMNYPNGS 400 
WD40-rpts      (__________________WD 8__________________)                                      

Query      401 NSLINPNNNLSHQGPYQNKDTFHRSSQGNFAAYNNSTQQQQQYSNVNSTGSQMNNVQAGNTVSNNVISNFANNNTNQMKG 480 
WD40-rpts                                                                                      

Query      481 PPGQMNEPPGQMNGPPSQMNGPPSQMNGPPSQITVPPTPPAYLTMQNSKKNNTSNLTPNMNNIPPPTAPPLVVNNSHGAS 560 
WD40-rpts                                                                                      

Query      561 GPYAPSNFSQQPHGVSAPFGVPSSSPPAQQQVGGSVTNMSVSSNINNNKSTFGGPPPPLPSTSTTPIIPAAGSSNFPKAS 640 
WD40-rpts                                                                                      

Query      641 TSSLQQQVHGPFPNVNMSRSSFAINSQMPPSFSHPNNNNNNNNNNNINNNNNNSGMMPPRPSQYSNNLNLNPLSTSVPPP 720 
WD40-rpts                                                                                      

Query      721 AFSSDTQGMQNKNSITSNFNNNSNNSFSNFNSHMNQANLPPPNPSVMNPSKPVGSTYGSISGGYNVPHAPNMMNDSNVKP 800 
WD40-rpts                                                                                      

Query      801 QNQQYGYSNYNMPPRQNTHMNN 822 
WD40-rpts                            

8 WD40-repeats found in QUERY=EG_PFL1480w (Len=822):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-40       9.27  497.72  1.2e-05       22.5%     53.41
  WD 2:  Seg  5    41-87       6.84  397.25  0.00028       30.0%     56.90
  WD 3:  Seg  9    94-134      6.97  402.41  0.00023       32.5%     54.35
  WD 4:  Seg 13   137-183      6.40  378.95  0.00049       10.0%     17.93
  WD 5:  Seg 15   184-223      8.46  464.12  3.5e-05       15.0%     17.72
  WD 6:  Seg 17   226-275      6.09  366.03  0.00073       17.5%     48.67
  WD 7:  Seg 21   277-320      6.07  365.45  0.00074       15.0%     54.95
  WD 8:  Seg 25   321-362      3.12  243.65  0.03194        5.0%     10.39

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-40     MN-----E------L-------VVFDTYHGRSINDCELDY--Y----SKKLATCSSDNTVKIFD
   WD 2   41-87     VSLSKEPV------C-------VAELKDHSSAVWKVCWSHPKY----GSLLASCSFDKNVIIYK
   WD 3   94-134    -Y-----E------M-------IYINNEHVSSVNYIEWSP--H--EYGLHLGCASSDGTISILS
   WD 4  137-183    MN-----K------GSNEGYWNKYSMKAHLNGVACISWEK--P----YNNILLMNKNLNDNNNN
   WD 5  184-223    NN-----N------N-------NNNNNNNNNNNNNNNDVI--N----SFKLVSGGYDNQVIIWM
   WD 6  226-275    NN-----TKEFQKIY-------QMNDKPHKSSIKDVAWKP--NLDNSANIIASCSDEKIVILWI
   WD 7  277-320    DV-----T--NNVWK-------NGQIIKVKYNIHKISWSP--N----GTILAIACSDDNAYLYK
   WD 8  321-362    EN-----A----EGI-------WEEMCNLTEENNNIQDDN--S----MNMTNNEQENHNENMLN

   WD40 Template    TG-----E------C-------LRTLSGHTSGVTSVSFSP--D----GKRLVSGSEDGTIKVWD