Input parameters:

  Query = EG_PFL1820w (Len=490)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFL1820w, Len=490):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGNQVLDESDVVKHSSENIEKKEKIGKKKKTKKQKKEVKKSDIVSCIAFLSRGKKKKSLQESNDEHEENEEYEEYSKKEL 80  
WD40-rpts                                                                                      

Query       81 KKKKKRKKGKNNKYDVLENIFNDEREYKKSIVHDNLISKDKKYIYEDELNIEENDSIVINGKIYSDMGTLEIHVFNYDED 160 
WD40-rpts                                      (__________________WD 1__________________)  (___

Query      161 IFNIYDDVIIDNYPLCIETIHQSYFKEKNIVAVGTLDCSIQLWDLYNIDMLEPLYYLGDNEMKKMKKNKKRKLKTNNNIH 240 
WD40-rpts      __________________WD 2_____________________)   (____________________WD 3________

Query      241 YEKKNIKNIPEDEEPNNISKQKIKGHTDCITSLNSSKILPSLLVSGSKDSTVKLWDLNNLNNLHTFSFHQKKINNLSFHS 320 
WD40-rpts      ____________)   (_________________WD 4_________________)   (_________________WD 

Query      321 KDKNLLFSTSSDKTLKIYDIRQNQVALDIHLSNIPEATIWNTHEENIILSSYIDGYINKIDIKYINTSSNKPQNNYLVNF 400 
WD40-rpts      5_________________)   (_________________WD 6________________)            (______

Query      401 KAFENSCTSLLSMNYKNLTLAGSEDGVIKAYDFHNLLNEQPHCVYSKNLKKNLFYMKDNEDWPNVVFLGCDKLYDWDVFE 480 
WD40-rpts      ___________WD 7________________)(____________________WD 8___________________)   

Query      481 CEEIKKYFNL 490 
WD40-rpts                

8 WD40-repeats found in QUERY=EG_PFL1820w (Len=490):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   113-154      5.63  347.41  0.00129       12.5%     26.86
  WD 2:  Seg  4   157-204      7.46  422.85  0.00012       17.5%     48.10
  WD 3:  Seg  8   208-253      5.81  354.57  0.00104       10.0%     26.17
  WD 4:  Seg 11   257-296      8.94  483.86  1.9e-05       40.0%     51.88
  WD 5:  Seg 15   300-339      8.51  466.21  3.2e-05       37.5%     52.57
  WD 6:  Seg 19   343-381      7.99  444.62  6.3e-05       12.5%     56.14
  WD 7:  Seg 23   394-432      8.63  471.09  2.8e-05       27.5%     55.01
  WD 8:  Seg 27   433-477      4.68  308.15  0.00437       15.0%     39.86

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  113-154    -HDNLIS------KDKKY--------IYEDELNI-EEN-DSIVINGKIYSD-------MGTLEIHV
   WD 2  157-204    YDEDIFN------IYDDVIIDNYPLCIETIHQSY-FKE-KNIVAVG---TL-------DCSIQLWD
   WD 3  208-253    -IDMLEP------LYYLG--------DNEMKKMK-KNK-KRKLKTN---NNIHYEKKNIKNIPEDE
   WD 4  257-296    -NISKQK------IKGHT--------DCITSLNS-SKILPSLLVSG---SK-------DSTVKLWD
   WD 5  300-339    -LNNLHT------FSFHQ--------KKINNLSFHSKD-KNLLFST---SS-------DKTLKIYD
   WD 6  343-381    -NQVALD------IHLSN--------IPEATIWN-THE-ENIILSS---YI-------DGYINKID
   WD 7  394-432    -NNYLVN------FKAFE--------NSCTSLLS-MNY-KNLTLAG---SE-------DGVIKAYD
   WD 8  433-477    FHNLLNEQPHCVYSKNLK--------KNLFYMKD-NED-WPNVVFL---GC-------D-KLYDWD

   WD40 Template    TGECLRT------LSGHT--------SGVTSVSF-SPD-GKRLVSG---SE-------DGTIKVWD